Checked by Thomas R. DeVino, Andreas R. Rötheli, and Margaret Faul
1. Procedure (Note 1)
A. Dodecanenitrile. A 1-L, three-necked, round-bottomed flask is equipped with an oval Teflon-coated magnetic stir bar, a rubber septum, a nitrogen line fitted to a glass bubbler filled with mineral oil, and a 250-mL pressure-equalizing addition funnel capped with a rubber septum pierced with a needle (Notes 2, 3, 4, and 5) (Figure 1).
While under a continuous flow of nitrogen, the flask is dried with a heat gun and then allowed to cool to room temperature. The needle on the addition funnel is removed. Then the septum on the flask is removed and the flask is charged with 200 mL of dichloromethane (Note 6), Oxone (80.0 g, 130 mmol, 2.6 equiv) (Note 7), and pyridinium bromide (365 mg, 2.25 mmol, 0.045 equiv) (Note 8) (Figure 2). The heterogeneous mixture is stirred for 15 min until a faint yellow color develops (Figure 3).
Dry
pyridine (20 mL, 19.6 g, 250 mmol, 5 equiv) (
Note 9) is then added
via syringe through the rubber septum (Figure 3), upon which the yellow color of the reaction mixture intensifies (Figure 4). The reaction mixture is stirred for 1-2 min, the septum is then removed and the
4-acetamidoTEMPO catalyst (533 mg, 2.50 mmol, 0.050 equiv) (
Note 10) is added in one portion.
Figure 1. Initial reaction flask setup for drying (provided by checker); Figure 2. Initial mixture of Oxone and pyridinium bromide in dichloromethane (provided by checker)
Figure 3. Reaction mixture prior to the addition of pyridine (provided by checker); Figure 4. Reaction mixture after the addition of pyridine (provided by checker)
The septum is placed back on the flask and the reaction mixture, which darkens upon addition of the catalyst (Figure 5), is stirred for 15-30 min.
Figure 5. Reaction mixture after the addition of catalyst
(provided by checker)
A clean, dry 125-mL Erlenmeyer flask is charged with
dodecylamine (9.24 g, 49.9 mmol, 1 equiv) (
Note 11) and 100 mL of
dichloromethane. The Erlenmeyer flask is swirled to dissolve the amine. The septum on the addition funnel is removed and the homogenous solution of the amine is transferred to the addition funnel through the use of a funnel. The Erlenmeyer flask is then rinsed with additional
dichloromethane (10 mL) to ensure complete transfer and to rinse any residual amine from the funnel. The funnel is then removed and the septum is placed back onto the addition funnel. An additional nitrogen line is added through the septum of the addition funnel and the addition rate is adjusted to ensure a constant delivery of the amine solution at approximately 40-50 mL/h (Figure 6). Addition of the amine takes approximately 2-2.5 h to complete, at which point additional
dichloromethane (20 mL) is added
via syringe to the funnel (
Note 12) (Figure 8) allowing for any residual white solid (Figure 7) to be rinsed into the reaction flask. The light yellow reaction mixture (Figure 8) is stirred at 23 °C (
Note 13) for an additional 9-15 h (
Note 14).
Figure 6. Reaction flask setup for the addition of the amine solution in dichloromethane (provided by checker); Figure 7. Residual solids in the addition funnel after amine addition (provided by checker)
Figure 8. Rinse of residual solid with dichloromethane using a syringe (provided by checker); Figure 9. Reaction flask with final reaction mixture before extended stirring. (provided by checker)
During this time the reaction mixture turns from a yellow suspension (Figure 9) to a clear yellow solution with sticky yellow solids along the wall of the round-bottomed flask (Figure 10)
Figure 10. Reaction flask with final reaction mixture after extended stirring (provided by checker)
A 600-mL medium porosity, sintered glass Büchner funnel is filled with 150 g of silica gel (
Note 15), and a small filter paper (90 mm diameter, coarse porosity) is placed on top of the silica gel. The funnel is then fitted to a 1-L round-bottomed flask, set up for vacuum filtration, and the reaction mixture is poured through the filtration setup (Figure 11). The reaction flask is rinsed with an additional 300 mL of
dichloromethane and poured through the filtration setup (
Note 16) (Figure 12). The yellow solids remain in the original flask (Figure 13).
Figure 11. Filtration of reaction mixture through silica gel. (provided by checker); Figure 12. Filtration setup after dichloromethane wash (provided by checker)
Figure 13. Residual solids in the reaction flask after the dichloromethane wash (provided by checker)
The filtrate is concentrated by rotary evaporation (30--40 °C, 500 mmHg then to approx. 15 mmHg for 15-30 min) (
Note 17) to afford
dodecanenitrile (8.80 g, 94%) (Notes
18 and
19) as a pale yellow oil (Notes
20,
21, and
22). However, the title compound is reported in the literature as a clear, colorless oil.
3 Colorless product is obtained by transferring the pale yellow crude oil (
Note 23) to a 25-mL round-bottomed flask from the 1-L round-bottomed flask. The remaining oil in the 1-L round-bottomed flask is rinsed with
dichloromethane (2 x 5 mL) and transferred to the 25-mL round-bottomed flask to ensure all the oil is transferred. Then the
dichloromethane was removed by rotary evaporation (30-40 °C, 500 mmHg then to approx. 15 mmHg for 15-30 min). The 25-mL round-bottomed flask is then set up for bulb-to-bulb distillation (Kugelrohr, bath temp: 200 °C, 10-20 mmHg) (Figure 14) to afford analytically pure
dodecanenitrile (8.37 g, 93% yield) (Notes
24,
25,
26, and
27), as a clear colorless oil.
Figure 14. Kugelrohr setup at the beginning of the distillation
(provided by checker)
2. Notes
1. Prior to performing each reaction, a thorough hazard analysis and risk assessment should be carried out with regard to each chemical substance and experimental operation on the scale planned and in the context of the laboratory where the procedures will be carried out. Guidelines for carrying out risk assessments and for analyzing the hazards associated with chemicals can be found in references such as Chapter 4 of "Prudent Practices in the Laboratory" (The National Academies Press, Washington, D.C., 2011; the full text can be accessed free of charge at
https://www.nap.edu/catalog/12654/prudent-practices-in-the-laboratory-handling-and-management-of-chemical). See also "Identifying and Evaluating Hazards in Research Laboratories" (American Chemical Society, 2015) which is available via the associated website "Hazard Assessment in Research Laboratories" at
https://www.acs.org/content/acs/en/about/governance/committees/chemicalsafety/hazard-assessment.html. In the case of this procedure, the risk assessment should include (but not necessarily be limited to) an evaluation of the potential hazards associated with
dichloromethane,
Oxone,
pyridinium bromide,
pyridine,
4-acetamidoTEMPO,
dodecylamine, and silica gel, as well as the proper procedures for using a Kugelrohr apparatus.
2. The submitters used a 1-L one-necked, round-bottomed flask equipped with an oval Teflon-coated magnetic stir bar (40 mm x 20 mm) and capped with a septum that is connected
via a nitrogen line inlet and an outlet fitted to a glass bubbler filled with mineral oil (Figure 15). The submitters flame dried the flask prior to setting up the reaction.
Figure 15. Initial reaction flask setup for flame drying
(provided by submitter)
3. The submitters note that nitrogen gas is sufficient to establish an anhydrous atmosphere, and is less expensive than argon. However, if argon is available, it should be used as it results in slightly higher isolated yields ~2% greater than those obtained when nitrogen is used. The isolated yields reported in this manuscript were obtained when nitrogen gas was used.
4. A 250-mL constant-rate addition funnel was used, but a 125-mL funnel would suffice for this scale. Due to the use of a 1-L one-necked, round-bottomed flask the submitters had to mount a 500-mL constant-rate addition funnel available from Kontes (cat. # 186-634620-0500) after the addition of the
4-acetamidoTEMPO catalyst (Figure 16). Prior to fitting to the reaction flask, the funnel was calibrated with
dichloromethane to allow for the addition of 40-50 mL of solution per hour (~ 30 drops per minute) and the graduated hash mark where the rod was located was noted. A less sophisticated pressure-equalizing addition funnel would likely suffice as long as the rate of addition does not exceed 40-50 mL/h.
Figure 16. Reaction Flask Fitted with the Pressure-Equalizing Addition Funnel (provided by submitter)
5. The submitters report that the failure to purge the headspace of the addition funnel with nitrogen or argon gas results in the build-up of a white crystalline solid during the course of the addition of the amine substrate. This solid is likely the result of the reaction of the amine substrate with residual carbon dioxide to form a carbamic acid.
8 Build-up of the white solid can result in a slowed and problematic addition rate. However, the formation of the solid does occur to some extent even under the best attempts to remove the carbon dioxide, but its formation does not influence isolated yields of nitrile as the carbamic acid is in equilibrium with the free amine under the reaction conditions and the oxidation proceeds.
6.
Dichloromethane (ACS reagent grade ≥ 99.5%, <0.01% water, 40-150 ppm amylene stabilized) was purchased from Sigma-Aldrich and was used as received. The submitters report that this solvent contained the appropriate quantity of water to solubilize a small portion of the oxidant. The reaction fails to proceed under strictly anhydrous conditions
4 and significant quantities of aldehyde byproduct result when the water content is too high. For these reasons all other sources of water should be avoided.
7.
Oxone monopersulfate was purchased as a granular white powder from Alfa Aesar and used as received. Due to the hygroscopic nature of
Oxone, a fresh bottle is recommended, and it should be stored in a tightly closed container in a dry location such as a desiccator. The submitters reported that additional moisture absorbed by the
Oxone has a detrimental effect on the oxidation, and due to instability at high temperatures drying of the reagent is not recommended. The
Oxone should be added to a rapidly stirred solvent to avoid difficulties in initiating the stirring.
Oxone is a commercially available triple salt of empirical formula 2 KHSO
5•KHSO
4•K
2SO
4, and has a combined molecular mass of 614.7 g/mol. Each molar quantity of the triple salt contains 2 moles of the terminal oxidant (KHSO
5), which has a molecular mass of 152.2 g/mol. The oxidation requires at least 2.0 equivalents of KHSO
5 to proceed; however, it is beneficial to use an excess as it simplifies the work-up process (
Note 12). The amount of
Oxone employed in this procedure is 130 mmol (80.0 g, 2.6 equiv) per 50 mmol of amine substrate, and is arrived at by accounting for the fact that commercial
Oxone contains only 42-44 % by mass of the active component (KHSO
5).
5 As a result, 33.6 g (220 mmol, 4.4 equiv relative to the starting amine) of the terminal oxidant (KHSO
5) is present in the reaction mixture. This was calculated as follows:
50 mmol amine x 4.4 equiv. = 220 mmol oxidant
0.220 mol KHSO5 x (152.2 g KHSO5/1 mol KHSO5) = 33.5 g KHSO5
33.5 g KHSO5/0.42 = 80.0 g Oxone
8. Pyridine hydrobromide (98%) was purchased from Sigma Aldrich and used as received.
Pyridinium bromide is very hygroscopic and must be kept dry and moisture-free. The submitters report that it is essential that high-quality
pyridinium bromide, that does not contain any tribromide as the counterion, is used. Alternatively, a high-quality sample of
pyridinium bromide may be obtained from the reaction of freshly distilled
tert-butyl bromide with dry
pyridine.
6
9.
Pyridine (ACS reagent grade), was purchased from Sigma Aldrich and used as received. Submitters purchased from J.T. Baker and dried by magnetically stirring with calcium hydride for 24 h at room temperature in an oven-dried flask capped with a septum, then distilled under nitrogen collecting the fraction boiling at 114-116 °C into a flame-dried flask. While the oxidation requires at least 4 equivalents of
pyridine to proceed,
4 the additional equivalent of
pyridine ensures the amine substrate does not act as the base. When the amine substrate is protonated it fails to undergo any oxidative processes.
10.
4-AcetamidoTEMPO (
4-Acetamido-2,2,6,6-tetramethylpiperidine 1-oxyl) is commercially available in 98+% from Alfa Aesar. However, this nitroxide is easily and inexpensively prepared in multi-molar quantities from known procedures.
7 The submitters report that the catalyst should be dried in an Abderhalden drying pistol at 56 °C (acetone, 10 mmHg) overnight prior to use; mp 144-146 °C (lit. 7 145-147 °C). The checkers used commercial
4-acetamidoTEMPO as received, without any further drying.
11.
Dodecylamine (98% purity) was purchased from Sigma-Aldrich and used as received. The amine turns to a light yellow color over time, but is easily purified by bulb-to-bulb distillation (Bath temp: 155 °C, 15 mmHg), if necessary prior to use.
Dodecylamine was used as received by the checkers.
12. A small quantity of white solid forms upon the wall of the addition funnel (
Note 4) and the additional 20 mL of
dichloromethane should be added using a syringe to rinse the walls of the addition funnel so as to remove as much white solid as possible. The submitters removed the rubber septum and used a glass pipette to rinse the addition funnel (Figure 17)
Figure 17. Residual solid is rinsed with dichloromethane with a long glass pipette (provided by submitter)
13. The heterogeneous mixture may become difficult to stir and the stir bar may stop after the addition of the amine is complete. This does not seem to affect the yield as the oxidation is complete at this time. Additionally, the reaction temperature may increase slightly during the amine addition to approximately 30 °C.
14. The oxidation of the amine substrate to the corresponding nitrile is quite rapid and is completed usually within 1 h of addition. However, due to the requirement to use an excess of an external base,
pyridine, working the reaction up at this time would require an extractive work-up with acid. Removal of the excess
pyridine and isolation of the product is greatly complicated, and not feasible for acid-sensitive substrates. Thus, the reaction is allowed to stir for the given period of time as the excess
oxone efficiently oxidizes the majority of the excess
pyridine to pyridine-
N-oxide.
4 The pyridine-
N-oxide is easily removed upon work-up.
15. Silica gel was purchased from Acros Organics and the particle size was 0-60 µm (60 Å). The submitters used silica gel from Silicyle or ZEOChem and the particle size was 40-63 µm (230-400 mesh).
16. The submitters report that the filtration should be stopped when the colored bands (Figure 18) have moved to within 1 cm of the glass frit. The light yellow band is associated with the small excess of
pyridine present and should not be collected. On occasion a light purple band is visible and should not be collected either. The checkers did not observe these bands right after filtration. However, they did appear upon aging of the filter cake under ambient conditions.
Figure 18. Colored bands observed during filtration
(provided by submitter)
17. The submitters report that placing a small wooden boiling stick into the flask facilitates the removal of excess
dichloromethane while under vacuum, and can easily be removed prior to obtaining a final weight of compound without significantly altering the isolated yield.
18. Corresponds to weight adjusted yield based on purity determined by quantitative
1H NMR analysis (see below for
1H QNMR spectrum)
19. The submitters found that the refractive index of the crude product was n
D20 = 1.4353, and was in agreement with the literature value of n
D20 = 1.4361.
2
20. Additional runs of the procedure by the Checkers afforded the title compound with yields of 88% and 92%.
21. The submitters report that after storage over a period of 6 months in a refrigerator at 6 °C, in a glass vial capped with a septum, the compound maintains its initial light yellow color with no apparent decomposition. A check of the refractive index was done n
D20 = 1.4368, which is consistent with the value reported in the literature.
2
22. The procedure described will afford the title compound with purity sufficient for most purposes. Quantitative
1H NMR
pdf analysis showed this product was of 97% purity (18.9 mg of analyte with 21.2 mg benzyl benzoate of 100% purity purchased from Sigma-Aldrich as a standard; see below for
1H QNMR spectrum) The submitters used dimethylfumarate as an internal standard and also assessed purity by elemental analysis. calcd for C
12H
23N: C 79.49, H 12.79, N 7.72, found C 79.22, H 12.97, N 7.90.
23. A small portion (
i.e. 18.9 mg) was removed for quantitative
1H NMR analysis.
24. The distillation removes any trace impurities and results in a clear, colorless oil. Quantitative
1H NMR
pdf analyses showed that the distilled products were of >99.5% average purity. (
e.g. 18.6 mg of analyte with 21.4 mg benzyl benzoate of 100% purity purchased from Sigma-Aldrich as a standard; see below for
1H QNMR spectrum). Note: The submitters used dimethylfumarate as an internal standard.
25. The submitters found that the refractive index of the distilled product was n
D20 = 1.4364 and was in agreement with the literature value of n
D20 = 1.4361.
2
26. The product was characterized as follows:
9 1H NMR
pdf(500 MHz, CDCl
3) δ: 0.88 (t,
J = 6.9 Hz, 3H), 1.28 (m, 14H), 1.44 (quin,
J = 7.3 Hz, 2H), 1.65 (quin,
J = 7.4 Hz, 2H), 2.33 (t,
J = 7.2 Hz, 2H).
13C NMR
pdf(125 MHz, CDCl
3) δ: 14.3, 17.3, 22.9, 25.6, 29.0, 29.5, 29.7, 32.1, 120.0. FT-IR (neat, ATR): 2923, 2854, 2246, 1666, 1645, 1466, 1427, 1378, 1364,1329, 1246, 1163, 1122, 1070, 1054, 931, 907, 882, 846, 818, 722 cm
-1; GC-MS (EI): 182 ([M+1]
+, 7%), 181 ([M]
+, 0.6%), 180 ([M-1]
+, 3%), 138 (24%), 124 (36%), 110 (59%), 97 (85%), 82 (56%), 69 (42%), 57 (62%), 41 (100%); HRMS (DART-TOF) C
12H
23N [M+H]
+: calc. 182.1919, found 182.1909.
27. The submitters stored the product at 6 °C in a chemical refrigerator absent of light under an atmosphere of argon for a period of several weeks and observed no apparent decomposition or discoloration. A second sample was stored at room temperature on the laboratory bench in the absence of an argon atmosphere and the product returned to the original light yellow color observed prior to distillation. A check of the refractive index resulted in an n
D20 = 1.4355, which is similar to the value obtained prior to distillation.
3. Discussion
Appendix
Chemical Abstracts Nomenclature (Registry Number)
Dodecanenitrile: Dodecanenitrile; (2437-25-4)
Dichloromethane: Methane, dichloro-; (75-09-2)
Oxone: Potassium peroxymonosulfate sulfate; (37222-66-5 or 70693-62-8)
Pyridinium bromide: Pyridine, hydrobromide (1:1); (18820-82-1)
Pyridine: Pyridine; (110-86-1)
4-AcetamidoTEMPO: 1-Piperidinyloxy, 4-(acetylamino)-2,2,6,6-tetramethyl-; (14691-89-5)
4-Acetamido-2,2,6,6-tetramethylpiperidine 1-oxyl: 1-Piperidinyloxy, 4-(acetylamino)-2,2,6,6-tetramethyl-; (14691-89-5)
Dodecylamine: 1-Dodecanamine; (124-22-1)
Pyridine N-Oxide; Pyridine, 1-oxide; (694-59-7)
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