Checked by Colin Knus, Jaime Martín, Jorge A. González, and Cristina Nevado
1. Procedure (Note 1)
A.
1-(Pyrrolidin-1-yl)undec-10-en-1-one (
1).
An oven-dried (at 150 °C) 250 mL one-necked, round-bottomed flask, equipped with an egg-shaped, PTFE-coated magnetic stir bar (3 cm), is charged with
pyrrolidine (
Note 2) (7.11 g, 100 mmol, 1.0 equiv) and
Et3N (
Note 3) (21.0 mL, 150 mmol, 1.50 equiv) (Figure 1A). Anhydrous
dichloromethane (
Note 4) (100 mL) is added, the flask is sealed with a rubber septum (fitted with a 0.8 mm ⌀ needle) and then cooled to between 0 and 5 °C in a water-ice bath. While stirring (>800 rpm),
10-undecenoyl chloride (Notes
5 and
6) (23.6 mL, 110 mmol, 1.10 equiv) is added dropwise (50 mL syringe fitted with a 0.8 mm ⌀ needle) over the course of 15 min. The cooling bath is removed (Figure 1B), and the reaction mixture is allowed to warm to room temperature (23 °C) and stirred at this temperature for 16 h.
Figure 1. Reaction setup: A) After addition of pyrrolidine; B) After removal of cooling bath (photos provided by submitters)
After this time, the mixture is diluted with
Et2O (
Note 7) (200 mL) and the organic phase is washed sequentially with 1 M
HCl (
Note 8) (50 mL), saturated aqueous
NaHCO3 (
Note 9) (50 mL) and brine (
Note 10) (50 mL). The washed organic layer is dried over anhydrous
MgSO4 (
Note 11) (5 g) and filtered
via gravitational filtration using a glass funnel equipped with filter paper (
Note 12). The filtrate is concentrated by rotary evaporation (450 mmHg at 40 °C, followed by 7.5 mmHg at 40 °C), affording a thick yellow oil. The oil is mixed with
heptane (
Note 13) (5 mL) and loaded onto a silica gel column (300 ± 10 g; column dimensions: 6 x 30 cm, equilibrated with
heptane) (
Note 14), and 80 mL fractions are collected (Figure 2A). The column is initially eluted with 1 L of a 30%
EtOAc (
Note 15) in
heptane mixture, which is switched to 100%
EtOAc once the compound of interest starts to elute (Figure 2B). The compound of interest is collected in fractions 13-34, the solvent is removed by rotary evaporation (120 mmHg mbar at 40 °C, and 0.8 mmHg at 40 °C, followed by high vacuum (ca. 0.05 mmHg) at room temperature (23 °C) for 6 h) to obtain the product
1 as a colorless oil (22.2 g, 94%) (Figure 2C) (Notes
16 and
17).
Figure 2. A) Chromatography setup; B) TLC analysis of collected fractions; C) Product in a 100 mL flask (photos provided by submitters)
B.
1-(Pyrrolidin-1-yl)-2-((2,2,6,6-tetramethylpiperidin-1-yl)oxy) undec-10-en-1-one (
2). An oven-dried (at 150 °C) 1 L round-bottomed Schlenk flask, equipped with an egg-shaped, PTFE-coated magnetic stir bar (3 cm), is charged with
1-(Pyrrolidin-1-yl)undec-10-en-1-one (
1) (18.5 g, 78.0 mmol, 1.00 equiv) and
TEMPO (26.8 g, 172 mmol, 2.20 equiv) (Figure 3A) (
Note 18). The flask, which is connected to a vacuum-nitrogen manifold (Schlenk line) using rubber tubing, is sealed with a rubber septum. The flask is subsequently evacuated and refilled with nitrogen three times, after which anhydrous
dichloromethane (
Note 4) is added via cannula (0.8 ⌀ mm) (Figure 3B), followed by
2-fluoropyridine (
Note 19) (7.60 g, 6.70 mL, 78.0 mmol, 1.00 equiv) in one portion
via syringe (10 mL syringe with a 0.8 ⌀ mm needle). The flask is then cooled in a water-ice bath, while being kept under positive pressure of nitrogen (connected to the Schlenk line).
Trifluoromethanesulfonic anhydride (14.4 mL, 86.0 mmol, 1.10 equiv) (Notes
6,
20 and
21) is added dropwise via syringe (20 mL syringe with a 0.8 ⌀ mm needle) over the course of 10 min while stirring (500 rpm) (Figure 3C), after which the mixture is allowed to warm to room temperature (23 °C) and is stirred at this temperature for 14 h (
Note 22). After this time, water (500 mL) is added in one portion and stirring (1000 rpm) is continued for an additional 15 min (Figure 3D).
Figure 3. Reaction setup: A) after TEMPO addition; B) During CH2Cl2 addition; C) After trifluoromethanesulfonic anhydride addition; D) After water addition (photos provided by submitters)
Diethyl ether (300 mL) is added, the phases are separated, and the organic phase is sequentially washed with saturated aqueous
NaHCO3 (250 mL) and brine (100 mL). The washed solution is dried over anhydrous
MgSO4 (5 g) and filtered
via gravitational filtration using a glass funnel equipped with filter paper. The filtrate is concentrated by rotary evaporation (450 mmHg at 40 °C, followed by 8 mmHg mbar at 40 °C), affording a thick orange oil. The oil mixed with
heptane (5 mL) is loaded onto a silica gel column (approximately 500 ± 20 g, column dimensions: 8.5 x 25 cm, equilibrated with
heptane) and ca. 100 mL fractions are collected (Figure 4A). The column is first eluted with pure
heptane (1 L), which is discarded, followed by an eluent of 10%
EtOAc in
heptane (4 L) and then 20%
EtOAc in
heptane for the remainder of the separation (6 L). Fractions 22-95 (Figure 4B) are combined (
Note 23), and the solvent is removed by rotary evaporation (120 mmHg at 40 °C and followed by 0.8 mmHg at 40 °C) and by high vacuum (ca. 0.05 mmHg) at room temperature (23 °C) for 6 h to obtain the product
2 as an orange oil (25.1 g, 82%) (Figure 4C) (Notes
17,
24 and
25).
Figure 4. A) Chromatography setup; B) TLC analysis of collected fractions; C) Product in a 100 mL flask (photos provided by submitters)
C.
1-(Pyrrolidin-1-yl)undec-10-ene-1,2-dione (
3). A 250 mL, round-bottomed flask that is open to air is equipped with an egg-shaped, PTFE-coated magnetic stir bar (3 cm). the flask is charged with
1-(pyrrolidin-1-yl)-2-((2,2,6,6-tetramethylpiperidin-1-yl)oxy)undec-10-en-1-one 2 (9.80 g, 25.0 mmol, 1.00 equiv),
dichloromethane (50 mL) and deionized water (50 mL). The resulting mixture is stirred (800 rpm) and
magnesium monoperoxyphthalate hexahydrate (
Note 26) (30.9 g, 80% purity, 50.0 mmol, 2.00 equiv) is added in 10 portions over the course of 5 min. The resulting suspension is stirred under air at room temperature (23 °C) for 3 h (
Note 27). The reaction mixture is diluted with
EtOAc (250 mL) and a saturated aqueous solution of
Na2SO3(150 mL) (
Note 28) is added while stirring is continued for 10 min. The phases are then separated, and the organic phase is sequentially washed with saturated aqueous
Na2CO3 (2 x 150 mL) (
Note 29), 1 M
HCl (2 x 150 mL) and brine (100 mL). The washed solution is dried over anhydrous
MgSO4 (5 g) and filtered
via gravitational filtration using a glass funnel equipped with filter paper (
Note 12). The filtrate is concentrated by rotary evaporation (450 mmHg at 40 °C, followed by 120 mmHg at 40 °C), affording a thick orange oil. The oil is mixed with
heptane (5 mL) and then loaded onto a silica gel column (approximately 200 ± 10 g, column dimensions: 6 x 18 cm, equilibrated with
heptane) (Figure 5B). The column is then eluted with
heptane (500 mL) and a mixture of 10%
EtOAc in
heptane (500 mL), with all the eluent being discarded. At this point 80 mL fractions are collected as the column is eluted with a mixture of 10%
EtOAc in
heptane (800 mL), followed by a mixture of 20%
EtOAc in
heptane (2 L) for the remainder of the separation. Fractions 22-38 (confirmed by TLC, 20%
EtOAc in
heptane, silica on aluminum, R
f = 0.63,
KMnO4 stain) (Figure 5C) are collected and the solvent is removed by rotary evaporation (120 mmHg at 40°C, followed by 0.8 mmHg at 40 °C). The residue is exposed to high vacuum (ca. 0.05 mmHg) at room temperature (23 °C) for 6 h to obtain product
3 as a slightly yellow oil (3.62 g, 58%) (Figure 5D) (Notes
17 and
30).
Figure 5. A) Reaction setup after Na2SO3 addition; B) Chromatography setup; C) TLC analysis of collected fractions; D) Product in a 16 mL vial (photos provided by submitters)
D.
2-Hydroxy-1-(pyrrolidin-1-yl)undec-10-en-1-one (
4). A 250 mL, round-bottomed flask that is open to air is equipped with an egg-shaped, PTFE-coated magnetic stir bar (3 cm) and charged with
1-(pyrrolidin-1-yl)-2-((2,2,6,6-tetramethylpiperidin-1-yl)oxy)undec-10-en-1-one 2 (9.80 g, 25.0 mmol, 1.00 equiv) (Figure 6A), water (50 mL) and
acetic acid (50 mL) (
Note 31) (Figure 6B). The resulting mixture is stirred (600 rpm) open to air, and
zinc dust (16.3 g, 250 mmol, 10.0 equiv) (
Note 32) is added in 8 portions over the course of 5 min. The flask is loosely fitted with a PE stopper (
Note 33) and stirred at 50 °C for 2 h under air (Figure 6C).
Figure 6. Reaction setup: A) After substrate addition; B) After acetic acid addition; C) After zinc addition (photos provided by submitters)
After cooling to room temperature (23 °C), excess
zinc dust is filtered off
via gravitational filtration, into a 500 mL round-bottomed flask, using a glass funnel equipped with filter paper (
Note 12) (Figure 7A) and the reaction flask is rinsed with aqueous
acetic acid (1:1 v/v, 2 x 10 mL). Then, the volume of the filtrate is reduced by approximately two thirds by rotary evaporation (55 mmHg at 50 °C) (Figure 7B).
Dichloromethane (150 mL) is added, and the mixture is carefully neutralized by addition of saturated
NaHCO3 (ca. 70 mL) until pH 4 is reached (
Note 34). The phases are separated through use of a separatory funnel, and a half-saturated
sodium potassium tartrate solution (200 mL) (
Note 35) is added to the organic layer (in a 500 mL round-bottomed flask). The biphasic mixture is stirred for 3 h at room temperature, during which time a precipitate forms. The phases are separated using a separatory funnel (whereby the precipitate is collected together with the
dichloromethane phase), and the aqueous phase is extracted with
dichloromethane (3 x 100 mL) (Figure 7C) (Notes
17 and
36).
Figure 7. A) Filtration of excess zinc; B) After partial evaporation; C) After treatment with tartrate solution (photos provided by submitters)
The combined organic solutions (still containing the precipitate) are dried over anhydrous
MgSO4 (5 g) and the solids are filtered off
via gravitational filtration using a glass funnel equipped with filter paper (
Note 12). The filtrate is concentrated by rotary evaporation (450 mmHg at 40 °C and followed by 0.8 mmHg at 40 °C, followed by high vacuum (ca. 0.05 mmHg) at room temperature (23 °C) for 14 h), to afford product
4 as an-off white solid (5.46 g, 86%) (Figure 8) that requires no further purification (
Note 37).
Figure 8. Product 4 (photo provided by submitters)
2. Notes
1. Prior to performing each reaction, a thorough hazard analysis and risk assessment should be carried out with regard to each chemical substance and experimental operation on the scale planned and in the context of the laboratory where the procedures will be carried out. Guidelines for carrying out risk assessments and for analyzing the hazards associated with chemicals can be found in references such as Chapter 4 of "Prudent Practices in the Laboratory" (The National Academies Press, Washington, D.C., 2011; the full text can be accessed free of charge at
https://www.nap.edu/catalog/12654/prudent-practices-in-the-laboratory-handling-and-management-of-chemical. See also "Identifying and Evaluating Hazards in Research Laboratories" (American Chemical Society, 2015) which is available via the associated website "Hazard Assessment in Research Laboratories" at
https://www.acs.org/content/acs/en/about/governance/committees/chemicalsafety/hazard-assessment.html. In the case of this procedure, the risk assessment should include (but not necessarily be limited to) an evaluation of the potential hazards associated with
10-undecenoyl chloride,
pyrrolidine,
trimethylamine,
2-fluoropyridine,
trifluoromethanesulfonic anhydride,
2,2,6,6-tetramethylpiperidine 1-oxyl,
magnesium monoperoxyphthalate hexahydrate,
zinc,
acetic acid dichloromethane,
diethyl ether,
sodium bicarbonate,
sodium carbonate,
hydrochloric acid,
sodium potassium tartrate,
heptane,
ethyl acetate and silica gel.
2.
Pyrrolidine was purchased from Merck (purity >99.0) and used as received.
3.
Triethylamine was purchased from Fischer Chemicals, AG (purity >99.0) and used as received.
4.
Dichloromethane (>99.9%) was purchased from Honeywell (dried by mBraun SPS) and stored under argon.
5.
10-Undecenoyl chloride was purchased from TCI (purity >98.0) and used as received.
6. Excess reagent remaining in the needle was quenched with water.
7.
Diethyl ether was purchased from Honeywell (ACS reagent, purity >99.8) and used as received.
8. Aqueous
HCl (32%) was purchased from VWR and diluted to 1M.
9. Saturated aqueous
NaHCO3 was purchased from Honeywell (purity >99.7) and used as received.
10. Brine was purchased from Honeywell (purity >99.5) and used as received.
11. Anhydrous
MgSO4was purchased from Merck (purity >98.0) and used as received.
12. Filter paper (MN 615 ¼, >4 µm) was purchased from Macherey-Nagel.
13.
Heptane was purchased from Honeywell (purity >99.7) and used as received.
14. Silica gel was purchased from Merck (0.063-0.200 mm).
15.
Ethyl acetate was purchased from Honeywell (purity >99.7) and used as received.
16. Characterization data for
1:
1H NMR
pdf (400 MHz, CDCl
3) δ: 5.80 (ddt,
J = 16.9, 10.2, 6.7 Hz, 1H), 5.00 - 4.85 (m, 2H), 3.41 (dt,
J = 20.4, 6.70 Hz, 4H), 2.28 - 2.20 (m, 2H), 2.03 (dd,
J = 14.3, 6.9 Hz, 2H), 1.96 - 1.88 (m, 2H), 1.86 - 1.78 (m, 2H), 1.70 - 1.58 (m, 2H), 1.40 - 1.21 (m, 10H).
13C NMR
pdf (101 MHz, CDCl
3) d: 171.9, 139.3, 114.2, 46.7, 45.6, 34.9, 33.9, 29.6, 29.6, 29.5, 29.2, 29.0, 26.2, 25.0, 24.5. IR (neat) ν
max: 2973, 2925, 2870, 1650, 1439, 1132, 991, 909, 712 cm
-1. HRMS (ESI
+,
m/z): [M+H]
+ calculated for [C
15H
28NO]
+: 238.2165, found: 238.2168. TLC R
f = 0.25 (50%
EtOAc in
heptane, silica on aluminum, (Note 17)
KMnO4 stain). Purity was assessed at >99% by quantitative
1H NMR
pdf spectroscopy using ethylene carbonate (>99%) as an internal standard.
17. TLC analysis is performed on TLC plates purchased from Merck (TLC Silica gel 60 F
254).
18.
TEMPO was purchased from Fluorochem (purity 99%) and used as received.
19.
2-Fluoropyridine was purchased from Fluorochem (purity 98%) and used as received.
20.
Trifluoromethanesulfonic anhydride was purchased from Fluorochem (purity 99%) and used as received.
21.
Trifluoromethanesulfonic anhydride hydrolyses under air but can be reformed and purified according to a procedure reported by Stang and Dueber in
Org. Synth. 1974,
54, 79.
22. Maximum conversion was confirmed via
1H NMR analysis of the crude reaction mixture.
23. The product elution can be monitored by TLC (50%
EtOAc in heptane, R
f = 0.70, silica on aluminum,
KMnO4 stain). The product is closely followed by an unidentified by-product. The TLC analysis should be conducted and evaluated carefully, so as to not collect the by-product in the pooled fractions.
24. Slight changes in color might be observed between different runs through small amounts of an unidentified impurity.
25. Characterization data for
2:
1H NMR
pdf (400 MHz, CDCl
3) δ: 5.81 (ddt,
J = 16.9, 10.2, 6.7 Hz, 1H), 4.96 (ddd,
J = 13.6, 10.2, 1.4 Hz, 2H), 4.40 (dd,
J = 10.2, 4.7 Hz, 1H), 3.94 (dt,
J = 10.2, 6.6 Hz, 1H), 3.59 - 3.36 (m, 3H), 2.03 (dd,
J = 14.4, 7.0 Hz, 2H), 1.98 - 1.90 (m, 2H), 1.90 - 1.73 (m, 4H), 1.46 - 0.97 (m, 28H).
13C NMR
pdf (101 MHz, CDCl
3) δ: 171.3, 138.9, 113.8, 83.3, 60.2, 58.9, 46.5, 45.4, 40.3, 40.0, 33.4, 33.1, 32.4, 31.3, 29.4, 29.0, 28.7, 28.5, 25.8, 24.8, 23.8, 20.0, 19.7, 16.8.IR (neat) ν
max: 2973, 2925, 2870, 2853, 1650, 1439, 1375, 1339, 1132, 991, 909, 711 cm
-1. HRMS (ESI
+,
m/z): [M+H]
+ calculated for [C
24H
45N
2O
2]
+: 393.3476, found: 393.3479. R
f = 0.70 (50%
EtOAc in
heptane, silica on aluminum, (Note 17)
KMnO4 stain). Purity was assessed at >99% by quantitative
1H NMR
pdf using ethylene carbonate (>99%) as an internal standard. TLC
26.
Magnesium monoperoxyphthalate hexahydrate is purchased from Fluorochem (purity 80%) and used as received.
27. Full conversion is reached after 3 h. TLC analysis was not used for analysis since the starting material and the product possess similar R
f values.
28.
Sodium sulfite was purchased from Merck (>98%) and used to prepare the saturated solution.
29.
Sodium carbonate was purchased from Merck (>99.5%) and used to prepare the saturated solution.
30. Characterization data for
3:
1H NMR
pdf (400 MHz, CDCl
3) δ: 5.78 (ddt,
J = 16.9, 10.2, 6.7 Hz, 1H), 5.02 - 4.86 (m, 2H), 3.58 (t,
J = 7.4, Hz, 2H), 3.50 (t,
J = 6.9 Hz, 2H), 2.82 (t,
J = 7.4 Hz, 2H), 2.02 (dd,
J = 14.4, 6.9 Hz, 2H), 1.96 - 1.90 (m, 2H), 1.90 - 1.83 (m, 2H), 1.62 - 1.55 (m, 2H), 1.40 - 1.25 (m, 8H).
13C NMR
pdf (101 MHz, CDCl
3) δ: 201.2, 163.3, 139.2, 114.3, 47.4, 46.4, 39.4, 33.9, 29.3, 29.2, 29.0, 28.9, 26.5, 23.7, 23.1. IR (neat) ν
max: 3074, 2974, 2926, 2854, 1713, 1635, 1440, 1339, 1225, 995, 909 cm
-1. HRMS (ESI
+,
m/z): [M+H]
+ calculated for [C
15H
26NO
2Na]
+: 252.1958, found: 252.1957. TLC R
f = 0.63 (50%
EtOAc in
heptane, silica on aluminum, (Note 17)
KMnO4 stain). Purity was assessed at >99% by quantitative
1H NMR
pdf spectroscopy using ethylene carbonate (>99%) as an internal standard.
31.
Acetic acid (glacial, 100%) was purchased from Merck and used as received.
32.
Zinc dust was purchased from Merck (dust < 10 µm, purity >98%) and used as received.
33. Slow evolution of hydrogen gas can be observed.
34. Higher pH can lead to lower yields.
35.
Sodium potassium tartrate was purchased from Merck (99%) and used as received to prepare the solution.
36. It can take several minutes until the two phases have separated in the separatory funnel.
37. Characterization data for
4:
1H NMR
pdf (400 MHz, CDCl
3) δ: 5.77 (ddt,
J = 16.9, 10.2, 6.7 Hz, 1H), 5.02 - 4.82 (m, 2H), 4.14 (dd,
J = 7.5, 2.8 Hz, 1H), 3.62 - 3.49 (m, 1H), 3.50 - 3.38 (m, 2H), 3.32 (dt,
J = 10.2, 6.8 Hz, 1H), 2.05 - 1.78 (m, 6H), 1.67 - 1.16 (m, 13H).
13C NMR
pdf (101 MHz, CDCl
3) δ: 173.1, 139.2, 114.2, 69.4, 46.3, 46.0, 34.5, 33.8, 29.4 (2C), 29.1, 29.0, 26.1, 25.1, 23.9. IR (neat) ν
max: 3441, 2919, 2850, 1625, 1453, 1385, 1197, 1078, 992, 923, 732, 463 cm
-1. HRMS (ESI
+,
m/z): [M+H]
+ calculated for [C
15H
28NO
2]
+: 254.2115, found: 254.2115. TLC R
f = 0.23 (50%
EtOAc in
heptane, silica on aluminum, (
Note 17)
KMnO4 stain). Purity was assessed at >99% by quantitative
1H NMR
pdf using ethylene carbonate (>99%) as an internal standard.
3. Discussion
Scheme 1. A) Amide scope in α-OTMP amide oxidation; B) Synthesis of α-hydroxy and α-keto amides from α-OTMP amide
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