Checked by Jean-Nicolas Desrosiers, Nizar Haddad, and Chris H. Senanayake
1. Procedure
B.
tert-Butyl (S)-1-(methoxycarbonyl)but-3-enylcarbamate (
3). An oven dried 250-mL three-necked, round-bottomed flask containing an egg-shaped Teflon®-coated magnetic stir bar (4 cm long) is equipped with a reflux condenser fitted with an argon inlet adaptor, a thermometer and a rubber septum (
Note 1) (see photo). The apparatus is purged with argon. Keeping a positive flow of argon, the septum is removed temporarily and the flask is charged with
zinc dust (11.92 g, 182.3 mmol, 6 equiv) (
Note 9).
Dry
DMF (20 mL) (
Note 10) is then added to the flask via a syringe.
1,2-Dibromoethane (1.57 mL, 3.42 g, 18.2 mmol, 0.6 equiv) (
Note 11) is added next to the stirred suspension via a syringe. The mixture is stirred and heated to 60 °C and stirred at 60 °C for 45 min (
Note 12). The mixture is cooled to room temperature.
Chlorotrimethyl silane (
TMS-Cl; 0.77 mL, 6.0 mmol) (
Note 13) is added via a syringe to the slurry, which is stirred for 40 min at room temperature (
Note 14). A solution of
tert-butyl (R)-1-(methoxycarbonyl)-2-iodoethylcarbamate (
2, 10 g, 30.39 mmol) (
Note 15) in dry
DMF (20 mL) is added via a syringe (
Note 16) to the room temperature mixture of activated zinc, which is then heated in a 35 °C oil bath and stirred for 60 min. The zinc insertion was judged complete by TLC analysis (
Note 17). After complete zinc insertion, the reaction mixture is cooled to room temperature, and charged with
Pd2(dba)3 (779 mg, 0.85 mmol, 0.028 equiv) (
Note 18) and
tri(o-tolyl)phosphine (925 mg, 3.03 mmol, 0.1 equiv) (
Note 19). The resulting mixture is cooled to -78 °C. A solution of
vinyl bromide (1 M in THF, 42.5 mL, 42.5 mmol, 1.4 equiv,
Note 20) is added drop-wise via a cannula to the stirred -78 °C suspension. After the addition of the
vinyl bromide is complete, the cold bath is removed and the reaction mixture is allowed to warm to room temperature with stirring for 12 h (
Note 21). The reaction mixture is diluted with ethyl acetate (200 mL) and transferred to a 1 L Erlenmeyer. Water (200 mL) is added and the resulting mixture is filtered through a pad of 35 g of Celite™ in a 6 cm diameter filter funnel. The pad is washed with ethyl acetate (300 mL). The filtrate and washings are combined and transferred to a separating funnel. The organic layer is separated. The aqueous layer is extracted with ethyl acetate (2 x 200 mL). The combined organic layers are washed with brine (400 mL), dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure to give 8.2 g of brown oil, which is purified by column chromatography (
Note 22). Evaporation of the collected fractions yields 4.50 g (65%) of a brown oil (Notes
23 and
24).
2. Notes
1. The submitters conducted this procedure under an atmosphere of argon.
2.
Triphenylphosphine (99 %),
imidazole (purity ≥99 %), and
iodine (purity ≥99.9%) were obtained from Aldrich and used as provided. An exotherm of ∆ 7 °C per added portion of
iodine was observed by the checkers.
3. The submitters used dry
dichloromethane from a solvent filtration system (Glass Contour, Irvine, CA). The checkers used anhydrous
dichloromethane under inert atmosphere with a sure seal bottle from Aldrich chemical company, Inc.
4. The checkers
purchased
N-(tert-butoxycarbonyl)-L-serine methyl ester (
1) from Sigma-Aldrich. The material
was prepared by the submitters according to the procedure reported by Trost, et al.
2
5. TLC analysis was performed on Merck Aluminum silica gel plates 60 F
254.
Reaction conversion was ascertained using the following procedure. The reaction mixture was spotted directly on the TLC plate, which was eluted with (4:1) hexanes/ethyl acetate, and visualized with 254 nm UV light and KMnO
4 stain after heating: starting material
1 (R
f = 0.075, a UV inactive and KMnO
4 active spot); iodide
2 (R
f = 0.55, a UV active and KMnO
4 active spot).
6. Iodoalanine
2 is purified on a silica column in a dark place. The crude residue is absorbed onto 70 g of silica gel, and added to a column (18.4 cm diameter x 20 cm length), which is packed with a slurry of 360 g of silica (high purity grade Silica gel particle size 230-400 mesh ASTM, Merck Ltd.) in hexanes (700 mL). An eluent of 5% diethyl ether in hexanes (~1000 mL) is first flushed through the column to remove the less polar spot
tert-butyl 1-(methoxycarbonyl)vinylcarbamate. The eluent is switched to 10% diethyl ether/hexanes (~2500 mL) to elute the iodide (R
f = 0.55, 4:1 hexanes/ethyl acetate, visualized with 254 nm UV light and KMnO4 stain on heating).
7. The reaction performed at half scale provided product in 79% yield.
8. Iodide
2:
1H NMR
pdf(400 MHz, CDCl
3) δ: 1.44 (s, 9 H), 3.51-3.59 (m, 2 H), 3.78 (s, 3 H), 4.48-4.53 (m, 1 H), 5.32-5.38 (broad d, 1H);
13C NMR
pdf(100 MHz, CDCl
3) δ: 7.9, 28.4, 53.10, 53.8, 80.6, 154.9, 170.1; IR (film): 3346.6, 2981.6, 1731.6, 1688.9, 1521.4, 1438.3,1312.9, 1273.2, 1248.4, 1155.9, 1140.3, 1032.4, 1009.5, 862.9 cm
-1. HRMS calcd for C
9H
16NIO
4 [M+1]: 330.0124. Found: 330.0197. [α]
D +42.0 (
c 1.0, CHCl
3). Calcd for C
9H
16NIO
4: C, 32.84; H, 4.90; N, 38.56. Found: C, 33.06; H, 4.82; N, 4.28. The enantiomeric purity of compound
2 was >98 % by SFC (eluent 10 % MeOH, pressure 150 bar, flow rate 3 mL/min, injection volume 25 µL into a 20 µL loop, column AD-H, 25 cm x 5 µm, column temp. 35 °C, t
r = 1.68 min); injection of a sample containing an incremental addition of 0.1 mg of the
R-isomer (t
r = 2.25 min) into 10 mg
of
S-
2 established the limits of detection to be at least 1:99.
9.
Zinc dust (particle size <10 µm, >98 %) was purchased and used as received from Aldrich chemical company.
10. The submitters used dry
DMF from a solvent filtration system (Glass Contour, Irvine, CA). The checkers used anhydrous
DMF under inert atmosphere with a sure seal bottle from Aldrich chemical company.
11.
1,2-Dibromoethane was purchased from Baker Chemicals and used as received. The checkers purchased
1,2-dibromoethane from Aldrich Chemical Company, Inc. An exotherm of ∆ 35 °C and gas evolution were observed by the checkers after addition was completed.
12. The submitters used an oil bath kept at 60 °C external temperature once the exotherm stopped.
13.
TMS-Cl (purity ≥97%) was purchased from Aldrich chemical company and used as received.
14. Evolution of gas was observed after the addition of
TMS-Cl.
15. During addition of iodide
2, the round-bottomed flask was covered with aluminum foil and stirred in the dark until the reaction was complete, because iodide
2 is light sensitive.
16. The time for reagent addition varied with reaction scale. In the reported experiment, the addition was completed over 25 min in order to maintain the internal temperature below 35 °C.
17. TLC analysis was performed on Merck Aluminum silica gel plates 60 F
254.
Reaction conversion was monitored by spotting the reaction mixture on a TLC plate and eluting with 2:1 hexanes/ethyl acetate. Using 254 nm UV light, consumption of starting material (R
f = 0.7) and another spot slightly above the base line were visualized.
18.
Pd2(dba)3 (purity 97%) was purchased from Aldrich chemical company and used as received.
19.
Tri(o-tolyl)phosphine (purity ≥97%) was purchased from Aldrich chemical company and used as received.
20. Anhydrous THF (50 mL) in a flame-dried measuring cylinder fitted with a septum was cooled to -78 °C. On cooling, the volume of the THF contracted to 45 mL.
Vinyl bromide gas was bubbled into the THF until the total volume rose from 45 mL to 48.1 mL yielding a 1M solution. Employment of
vinyl bromide solutions of >1 molar augmented formation of methyl
N-(Boc)alaninate and diminished iodide yield. Checkers used commercially available 1 M
vinyl bromide in THF from Aldrich chemical company. Methyl
N-(Boc)alaninate is removed by chromatography: TLC R
f = 0.21 (9:1 hexanes/ethyl acetate), visualized as a UV inactive and KMnO
4 active spot. The checkers stopped the positive flow of argon after the addition was completed in order to avoid any loss of
vinyl bromide. Excess pressure is released through a bubbler connected to the argon inlet adapter. Submitters used a balloon connected to a three-way stopcock to contain the excess pressure of
vinyl bromide.
21. Reaction conversion is ascertained on an aliquot of the reaction mixture (100 µL), which was partitioned between ethyl acetate (200 µL) and water (500 µL). The ethyl acetate layer was analyzed by TLC using 9:1 hexanes/ethyl acetate as eluant, and the plate was visualized with 254 nm UV light as well as with KMnO
4 stain after heating: methyl
N-(Boc)alaninate (R
f = 0.21, a UV inactive and KMnO
4 active spot); iodide
2 (R
f = 0.29, a UV and KMnO
4 active spot); olefin
3 (R
f = 0.29, a UV inactive and KMnO
4 active spot).
22. Olefin
3 is purified on a silica column. The residue is absorbed onto 30 g of silica gel. The column (18.4 cm diameter) is packed with slurry of 250 g of silica (high purity grade Silica gel particle size 230-400 mesh ASTM, Merck Ltd.) in hexanes (1000 mL). Elution with 2% ethyl acetate/hexanes removes first all non-polar spots. Switching to 7% ethyl acetate in hexanes (~1500 mL) elutes the product (TLC R
f = 0.29, 9:1 hexanes/ethyl acetate), which is visualized as a UV inactive and KMnO4 active spot on heating.
23. The reaction performed at half scale provided product in 64% yield.
24.
N-(Boc)Allylglycine methyl ester (
3): [α]
D +20.2 (c 1.5, CHCl
3); lit.
3 [α]
D +18.8 (c 1.0, CHCl
3);
1H NMR
pdf(500 MHz, CDCl
3) δ: 1.40 (s, 9 H), 2.41-2.53 (m, 2 H), 3.70 (s, 3 H), 4.32-4.38 (m, 1 H), 5.04 (br s, 1 H), 5.08 (s, 1 H), 5.10-5.12 (m, 1 H), 5.62-5.71 (m, 1 H);
13C NMR
pdf(125 MHz, CDCl
3) δ: 28.37, 36.86, 52.29, 53.0, 79.94, 119.12, 132.42, 155.27, 172.62; IR (film): 3359.0, 2978.3, 1745.9, 1715.7, 1505.7, 1437.9, 1366.3, 1249.9, 1162.6, 1051.2, 1022.7, 920.6 cm
-1; HRMS calcd for C
11H
19NO
4 [M+1]: 230.1314; Found: 230.13867. In lieu of combustion analysis the checkers determined the purity of
N-(Boc)allylglycine methyl ester (98.1%) by quantitative
1H NMR assay using dimethyl fumarate as a standard. Attempts to ascertain the enantiomeric purity of olefin
3, as well as the hydrochloride obtained on treating
3 with HCl gas in
dichloromethane, both were unsuccessful using SFC on a chiral column. To assess enantiomeric purity, diastereomeric amides were synthesized using respectively Boc-L-Ala (1.5 equiv),
i-Pr
2NEt (2 equiv), HATU (1.5 equiv) (
Note 25). The residue was examined by
1H NMR spectroscopy in CD
3CN at 700 MHz and 400 MHz. Incremental addition of (
S,
S)-
6 into (
S,
R)-
9 (
Note 25) and observation of the methyl ester singlets at 3.691 and 3.697 ppm demonstrated the diastereomers were of >99:1 dr. Hence, olefin
3 is assumed to be of >98% enantiomeric purity.
25. Synthetic procedure for making diastereomers (
S,
S)-
6 and (
S,
R)-
9:
(
S)-Methyl 2-aminopent-4-enoate hydrochloride (
4). Dry HCl gas was bubbled into a stirred solution of
tert-butyl (
S)-1-(methoxycarbonyl)but-3-enylcarbamate (
3, 70 mg, 0.30 mmol) in dry
dichloromethane at room temperature. Consumption of SM was observed after 3h (TLC). The resulting solution was concentrated under reduced pressure to give (
S)-
4 as a brown solid:
1H NMR (400 MHz, CD
3OD) δ: 2.68-2.75 (m, 2 H), 3.86 (s, 3 H), 4.16-4.19 (m, 1 H), 5.27-5.33 (m, 2 H), 5.77-5.81 (m, 1 H).
(R
)-Methyl 2-aminopent-4-enoate hydrochloride
R-
8 was made by an analogous method as that used to prepare
S-
4.
(
S)-Methyl 2-((
S)-2-((
tert-butoxycarbonyl)amino)propanamido)pent-4-enoate (
S,
S-
6). A stirred solution of Boc-L-Ala (
5, 85.1 mg, 0.45 mmol, 1.5 equiv) in DCM (5 mL) was treated with amine hydrochloride (
S)-
4 (50 mg, 0.30 mmol, 1 equiv), DIEA (77.5 mg, 0.6 mmol, 2 equiv), and HATU (171.1 mg, 0.45 mmol, 1.5 equiv), stirred at room temperature for 16 h, diluted with DCM (~10 mL) and washed with saturated aqueous NaHCO
3. The layers were separated. The aqueous layer was extracted with DCM (~10 mL). The combined organic layers were washed with brine, dried over anhydrous sodium sulfate, filtered, and concentrated under reduced pressure to give (
S,
S)-
6 as brown oil, which was analyzed without further purification. This following spectral data was provided by the submitters. (
S,
S)-
6:
1H NMR
pdf(400 MHz, CD
3CN) δ: 1.27-1.28 (d,
J = 7.2, 3 H), 1.44 (s, 9 H), 2.43-2.51 (m, 1 H), 2.53-2.60 (m, 1 H), 3.70 (s, 3 H), 4.06-4.10 (m, 1 H), 4.44-4.49 (m, 1 H), 5.10-5.19 (m, 2 H), 5.63 (br s, 1 H), 5.72-5.82 (m, 1 H), 6.91 (br s, 1 H); (
S,
R)-
9 was made by the analogous method used to prepare (
S,
S)-
6 using
R-
8: (
S,
R)-
9:
1H NMR
pdf(400 MHz, CD
3CN) δ: 1.26-1.28 (d,
J = 7.2, 3 H), 1.44 (s, 9 H), 2.42-2.50 (m, 1 H), 2.53-2.60 (m, 1 H), 3.70 (s, 3 H), 4.05-4.09 (m, 1 H), 4.44-4.49 (m, 1 H), 5.10-5.18 (m, 2 H), 5.62 (br s, 1 H), 5.68-5.81 (m, 1 H), 6.90 (br s, 1 H).
3. Discussion
Although a variety of methods have provided allylglycinates in enantiomerically enriched forms,
3,15,16,17,18,19,20,21,22,23,24,25 they require often longer reaction sequences. Diastereoselective syntheses of allylglycinate have been achived using chiral auxiliaries which may be removed or destroyed,
23 such as ephedrine-derived imidazolidinone glycinimides,
22 menthone-derived nitrones,
18 and camphor-derived glycine derivatives.
17,20,24, Enantioselective approaches to allylglycinate have featured allylation of ketoester oximes employing chiral bis(oxazoline) ligands,
21 and allylation of
tert-butyl glycinate using tartrate-derived and Cinchona alkaloid-derived quaternary ammonium phase-transfer catalysts.
19,28 In addition, allylglycinates have been prepared from amino acids as chiral educts. For example, glutamate served as starting material for the syntheisis of allyl 2-(Boc)amino-4-triphenylphosphonium butanoate, which reacted with various aldehydes and paraformaldehyde in Wittig-Horner-Wadsworth-Emmons reactions to yield unsaturated amino acids.
16 Similarly, ylide from methyltriphenylphosphonium bromide reacted with α-
tert-butyl
N-(PhF) aspartate β-aldehyde to provide protected allylglycinate.
4 In the context of our research in peptide mimicry,
4,5 we required an efficient, atom economical route to enantiomerically pure allylglycine analogues. Building on the established precedent of zinc-mediated, palladium-catalyzed cross-coupling reactions of commercially available and inexpensive
tert-butyl (R)-1-(methoxycarbonyl)-2-iodoethylcarbamate,
2,15,26,27,29 this extension employs
vinyl bromide to give effective access to allylglycine in enantiomerically pure form on multi-gram scale.
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