Checked by John T. Colyer, Christopher J. Borths and Margaret Faul
1. Procedure
A. Methyl (1H-imidazole-1-carbonyl)-L-alaninate (1). A 500-mL round-bottomed, single-necked flask, equipped with a 50 x 20 mm, Teflon-coated, oval magnetic stir bar, is charged with N,N'-carbonyldiimidazole (CDI) (11.6 g, 71.6 mmol) (Note 1), which is weighed into the flask under air, followed by dichloromethane (40 mL) (Note 2). Gentle stirring produces a slightly turbid suspension. The flask is sealed with a rubber septum, into which is inserted a digital thermometer probe. The flask is placed in an ice water bath to bring the temperature of the solution to 0 °C (Note 3) (Note 4). A second 250-mL round-bottomed, single-necked flask equipped with a 50 x 20 mm, Teflon-coated, oval magnetic stir bar, is then charged with L-alanine methyl ester hydrochloride (HCl•H2N-Ala-OMe) (10.0 g, 71.6 mmol) (Note 5), which is weighed into the flask under air, followed by dichloromethane (80 mL) (Note 2). To the resulting white suspension is added diisopropylethylamine (DIPEA) (9.25 g, 12.5 mL, 71.6 mmol) (Note 6). At this stage, the suspension turns to a clear solution (Note 7), which is then transferred to a 250-mL dropping funnel (20 x 5 cm) (Note 8). The dropping funnel is attached to the 500-mL round-bottomed flask containing the chilled CDI suspension and fitted with a calcium chloride filled drying tube (15 g) (Notes 9 and 10). The amino acid/DIPEA solution is then added dropwise over 40 min (Note 11) to the CDI-suspension at 0 °C (Notes 4 and 12). As the reaction progresses, the suspension transforms into a clear, colorless solution. After the complete addition of the L-alanine methyl ester solution, the final mixture is stirred at room temperature (23 °C) for 20 h (Note 13). Upon completion of the reaction (Note 14), the mixture is concentrated using a rotary evaporator (30 °C water bath, 40 mmHg). Ethyl acetate (EtOAc) (200 mL) is added and the solution is transferred to a 1.0 L separatory funnel (Note 15). Additional EtOAc (50 mL) is used to assist transfer. The mixture is washed once with deionized water (150 mL). The aqueous layer is separated and further extracted with EtOAc (2 x 60 mL). The combined organic layers are dried over anh. magnesium sulfate (50 g) (Note 16), filtered through a glass filter funnel filled with cotton (Note 17), and concentrated using a rotary evaporator (30 °C water bath, 10 mmHg) to provide a viscous oil. The crude product is purified by flash chromatography on silica gel to afford 1 (10.21 g, 70.3%) (Notes 18, 19, and 20) as a white solid (Note 21 and 22).
B.
Methyl (tert-butoxycarbonyl)-L-phenylalanyl-L-alaninate (2). A 100-mL round-bottomed, single-necked flask equipped with a 30 x 16 mm, Teflon-coated, oval magnetic stir bar, is charged with
methyl (1H-imidazole-1-carbonyl)-L-alaninate (8.0 g, 40.6 mmol) (
Note 23), which is weighed into the flask under air, followed by
CH2Cl2 (41 mL, 1.0 M) (
Note 2). Gentle stirring at 20-22 °C (
Note 24) gives a clear colorless solution, to which is successively added
Boc-L-phenylalanine (
Boc-Phe-OH) (16.16 g, 60.9 mmol),
1-hydroxybenzotriazole hydrate (
HOBt hydrate) (549 mg, 10 mol%, 4.06 mmol) and
copper(II) bromide (
CuBr2) (907 mg, 10 mol%, 4.06 mmol) (
Note 25). The flask is closed with a rubber septum equipped with a needle (
Note 26). As the reaction progresses,
CuBr2 becomes more and more soluble and the solution evolves from pale blue into a deep turquoise/blue slurry (Figure 1).
Figure 1. Reaction appearance
The reaction is stirred (
Note 27) at 20-22 °C for 20 h. Upon completion of the reaction (TLC monitoring) (
Note 28), the mixture is transferred into a 1.0 L Erlenmeyer flask, diluted with
dichloromethane (
CH2Cl2) (250 mL) and quenched with an aqueous solution of 0.5 N HCl (100 mL) (
Note 29). Afterwards, the mixture is transferred to a 1.0 L separatory funnel. Additional
CH2Cl2 (50 mL) is used to assist transfer. The aqueous layer is separated and further extracted with
CH2Cl2 (1 x 50 mL). The combined organic layers are washed with a saturated solution of
sodium bicarbonate (
NaHCO3) (100 mL) (
Note 30), and the aqueous layer is further extracted with
CH2Cl2 (1 x 50 mL). The combined organic layers are then washed with brine (100 mL), dried over
MgSO4 (50 g) (
Note 16), filtered through a glass filter funnel filled with cotton (
Note 31), and concentrated using a rotary evaporator (30 °C water bath, 10 mmHg) to give a white solid. The crude product is purified by flash chromatography on silica gel to afford
2 (11.73 g, 82.4%) (
Note 32) as a white foam (Note
33 and
34) (Figure 2).
2. Notes
1.
N,N'-Carbonyldiimidazole (
CDI) was purchased from Sigma-Aldrich (reagent grade) and used as received.
2.
Dichloromethane was purchased from Sigma-Aldrich (certified 99.8%, containing 50-150 ppm amylene as stabilizer) and used as supplied. Caution should be taken with the
CH2Cl2 quality in order to prevent the formation of undesired side compounds.
CH2Cl2 stabilized with EtOH should be avoided, otherwise the formation of
ethyl 1H-imidazole-1-carboxylate could also be detected on the first step.
3. Cooling is necessary in order to avoid the formation of
symmetrical urea (Note 22).
4. The mixture is stirred at 500 rpm throughout the reaction.
5.
L-Alanine methyl ester hydrochloride, 99% from Sigma-Aldrich, was used as received. This compound is very hygroscopic.
6.
Diisopropylethylamine (
DIPEA) (99.5%) was purchased from Sigma-Aldrich and used without further purification.
7. For small scale synthesis (<15 mmol)
triethylamine (
Et3N) was used as base. For operational facility on large scale
DIPEA was used, which, in contrast to
Et3N, generates a soluble salt in the presence of
HCl•H2N-Ala-OMe in
CH2Cl2. This soluble salt is easier to add dropwise into the
CDI pre-cooled suspension.
8. The flask containing the mixture of
L-alanine methyl ester hydrochloride and
DIPEA was rinsed twice with
CH2Cl2 (2 x 5 mL). Then, the combined 10 mL were added to the dropping funnel.
9. A dropping funnel with a Teflon tap was used for the addition of the amino acid to the
CDI suspension.
10.
Calcium chloride (anhydrous, granular, ≤ 7.0 mm, ≥93.0%) from Sigma-Aldrich was used as received. The drying tube containing a sintered glass filter was used.
11. The dropping funnel containing the mixture of
L-alanine methyl ester hydrochloride and
DIPEA was rinsed twice with
CH2Cl2 (2 x 5 mL).
12. The slow addition of L-alanine methyl ester solution is necessary in order to avoid the symmetric urea formation (Note 22).
13. A second reaction was allowed to proceed for 22 hours.
14. The formation of the desired product was observed by TLC (on Merck silica gel 60 F
254 TLC aluminum plates) and visualized with UV light and ninhydrin staining solution (Note 35). R
f product: 0.20, eluent:
EtOAc 100%. Visualization was difficult with UV light when dilute samples were used.
15.
Ethyl acetate (≥99.8% from Sigma-Aldrich) was used as received.
16.
Magnesium sulfate (≥99.5% from Sigma-Aldrich) was used as received.
17. Additional
EtOAc (2 x 20 mL) is used during filtration to assist transfer. An M grade glass filter was used for the filtration.
18. The crude reaction product (14.5 g) was adsorbed on silica (40 g of silica with 150 mL of
CH2Cl2 followed by evaporation) and then loaded onto a column (diameter: 7 cm, height: 70 cm) packed with silica gel (300 g of silica, pore size 60Å, 230-400 mesh, 40-63 µm particle size, Fluka Analytical) slurry in
EtOAc 100%. After 500 mL of initial elution, fraction collection (250 mL fractions) is begun, and elution is continued with 4.5 L of pure
EtOAc. The desired α-activated amino ester is obtained in fractions 4-18, which are concentrated by rotary evaporation (30 °C, 10 mmHg) and then dried at 0.05 mmHg. Residual
ethyl acetate was difficult to remove and could be observed by
1H NMR after 1 week under house vacuum (<1%).
Ethyl acetate did not hinder the formation and isolation of product during the next step.
19. Yields were adjusted for wt% of product as determined by QNMR (97.2% wt% and 98.2% wt% for Run 1 and 2, respectively).
20. The chemical yield of this step can be improved to 86% by using 1.5 equiv of
CDI.
21. A second reaction at the same scale provided 10.52 g (73.2%, 98.2% wt%) of a white solid. Yields were adjusted for potency of product. Weight percent was determined by QNMR with benzyl benzoate as an internal standard. Characterization as follows: [α]
D26 +31.3 (
c 0.7, CHCl
3);
1H NMR
pdf(400 MHz, CDCl
3) δ: 1.54 (d,
J = 7.2 Hz, 3 H), 3.81 (s, 3 H), 4.66 (quint,
J = 7.2 Hz, 1 H), 7.01 (br d,
J = 6.9 Hz, 1 H), 7.08 (s, 1 H), 7.41 (t,
J = 1.4 Hz, 1 H), 8.18 (s, 1 H);
13C NMR
pdf(100 MHz, CDCl
3) δ: 17.3, 49.5, 52.5, 116.4, 129.5, 136.1, 148.7, 172.8; IR (neat): 3138.9, 2969.5, 2878.8, 2809.5, 1740.3, 1711.7, 1553.7, 1484.4, 1454.5, 1376.9, 1288.4, 1256.4, 1213.2, 1150.6, 1104.2, 1072.7, 754.8 cm
-1; HRMS (ESI)
+ [M+H]
+ calcd for C
8H
12N
3O
3: 198.0879. Found: 198.0873. mp 90.0-92.5 °C; the melting point was lower than that reported by the submitters (mp 95.6-97.9 °C) due to residual solvent and impurities.
22. The
symmetrical urea depicted below is generated from auto-condensation of the free α-aminoester and its activated form. Its formation is observed either when the reaction is run at higher temperatures (> 0 °C) or when the reagents are added at once. It might be noted that on small-scale reactions, only small amounts (<7%) of this compound were observed in the crude material.
6 A peak in
1H NMR was observed after column chromatography that is consistent with the 6H singlet expected at ~3.7 ppm. If this resonance is assigned correctly, then 1.7% and 1% of the
symmetrical urea impurity was observed, respectively, in Runs 1 and 2 after column chromatography. The impurity was removed during the subsequent isolation in Step 2.
23. Charges were not adjusted for wt% of
methyl (1H-imidazole-1-carbonyl)-L-alaninate.
24. The checkers performed this chemistry at ambient temperature (20-22 °C) in an unjacketed flask without temperature control. The submitters report that control of temperature is very important to ensure good reaction yields. Temperatures lower than 25 °C lead to the formation of dipeptides, with erosion of isolated yields.
25. The following reagents were purchased from commercial sources and used without further purification:
Boc-Phe-OH, ≥99% from Aldrich;
HOBt hydrate, wetted with not less than 14 wt.% water, 97% from Aldrich;
CuBr2, 99% from Aldrich.
26. The rubber septum is equipped with a needle (22G x 1½" 0.7 x 40 mm) in order to allow the removal of
CO2 that is formed during the reaction.
27. The mixture is stirred at 400 rpm throughout the reaction.
28. The formation of the dipeptide was monitored by TLC analysis on Merck silica gel 60 F
254 TLC aluminum plates and visualized with UV light and ninhydrin staining solution (
Note 35). R
f dipeptide: 0.3, eluent: pentane/EtOAc 7:3. Pentane (≥99% from Sigma-Aldrich) was used as received.
29. The mixture is swirled vigorously for 10 min while deep blue color faded to very pale light blue.
30. The addition of a saturated solution of
NaHCO3 to the organic layer was followed by the formation of an emulsion, which disappears after standing in the separatory funnel for approximately 15 minutes.
31. Additional
CH2Cl2 (2 x 20 mL) is used during filtration to assist transfer.
32. Yields are based on two full scale runs and are adjusted for wt% of product as determined by QNMR (99.6% wt% and 100% wt% for Run 1 and 2, respectively).
33. The crude product (14.0 g) was adsorbed on silica (40 g of silica with 120 mL of
CH2Cl2 followed by evaporation) and then was loaded onto a column (diameter: 7 cm, height: 70 cm) packed with a short pad of silica gel (200 g of silica pore size 60Å, 230-400 mesh, 40-63 µm particle size, Fluka Analytical) slurry in pentane:EtOAc 7:3. After 500 mL of initial elution, fraction collection (250 mL fractions) is begun, and elution is continued with 3.25 L of additional solvent. The desired dipeptide is obtained in fractions 3-13, which are concentrated by rotary evaporation (30 °C, 10 mm Hg) and then dried at 0.05 mmHg.
34. A second reaction at the same scale provided 11.86 g (83%, 99.6% wt%) of a white foam. Yields were adjusted for potency of product. Weight percent was determined by QNMR with benzyl benzoate as an internal standard. Characterization as follows: mp 108.0-110.5 °C; [α]
D26 +0.40 (
c 0.99, CHCl
3);
1H NMR
pdf(400 MHz, CDCl
3) δ: 1.34 (d,
J = 7.0 Hz, 3 H), 1.40 (s, 9 H), 3.02-3.12 (m, 2 H), 3.71 (s, 3 H), 4.26-4.44 (m, 1 H), 4.52 (quint,
J = 7.1 Hz, 1 H), 5.08 (br. S, 1 H), 6.46-6.66 (m, 1 H), 7.18-7.32 (m, 5 H);
13C NMR
pdf(100 MHz, CDCl
3) δ: 18.0, 28.1, 38.3, 47.9, 52.2, 55.4, 79.9, 126.7, 128.4, 129.3, 136.6, 155.3, 170.9, 172.8. IR (neat): 3323.4, 2984.1, 2946.6, 1751.7, 1692.8, 1655.5, 1522.4, 1445.9, 1385.8, 1366.2, 1250.5, 1159.4, 1049.5, 988.9, 859.6, 664.4 cm
-1; HRMS (ESI)
+ [M+H]
+ calcd for C
18H
27N
2O
5: 351.1920. Found: 351.1915.
35. The ninhydrin stain was prepared using 1.5 g of
ninhydrin dissolved in 100 mL of
n-butanol and 3.0 mL of
AcOH.
3. Discussion
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