Stannylamine Protocol (SnAP) Reagents for the Synthesis of C-Substituted Morpholines from Aldehydes
1. Procedure (Note 1)
A. 1-((Tributylstannyl)methoxy)propan-2-amine (1). Sodium hydride (1.12 g, 27.9 mmol, 1.1 equiv) (Note 2) is weighed out open to the air and added in one portion to an oven-dried 500-mL, pear-shaped recovery flask equipped with a 40 x 20 mm, Teflon-coated, oval magnetic stir bar, a rubber septum and a nitrogen inlet needle. pentane (7.5 mL) (Note 3) is added via a syringe through the septum and stirring is started to release the sodium hydride free from the mineral oil. Stirring is stopped after 10 min, the septum is removed, and the supernatant pentane is removed using a glass pipette. The septum is reattached, anhydrous THF (135 mL) (Note 4) is added via a syringe, and stirring with a rate of ca. 400 rpm is started. N,N-Dimethylformamide (30 mL) (Note 5) is added after 10 min via a syringe. The grey suspension is cooled to ca. 0-5 °C using an ice/water bath for 30 min before DL-alaninol (2.00 mL, 1.90 g, 25.3 mmol, 1.0 equiv) (Note 6) is added dropwise via syringe over 15 min. The ice/water bath is removed, and the grey suspension is stirred at 25-27 °C for 2 h to afford a yellow suspension that is re-cooled to 0-5 °C using an ice/water bath (Figure 1a and b). At this point, tributyl(iodomethyl)stannane (10.9 g, 25.3 mmol, 1.0 equiv) (Note 7) is added dropwise to the reaction flask over 1.5 h via a syringe pump using a 10-mL plastic syringe. The ice/water bath is removed and stirring at 25-27 °C is continued for 6 h to afford a colorless suspension (Figure 1c) (Notes 8 and 9).
The suspension is re-cooled to 0-5 °C using an ice/water bath and saturated
NH4Cl (25 mL) is added in one portion via a graduated cylinder. The cooling bath is removed and stirring is continued at 25-27 °C. After 10 min, the biphasic mixture is poured into a 500 mL separatory funnel containing
ethyl acetate (50 mL) and water (50 mL). The aqueous layer is separated and extracted with
ethyl acetate (3 x 25 mL). The combined organic layers are washed with saturated
NaCl solution (3 x 25 mL), dried over anhydrous
MgSO4 (12.5 g), and filtered through a 100-mL sintered glass Büchner funnel (medium porosity, 66 mm diameter).
Figure 1. Color change through the course of the reaction
The MgSO4 is washed with ethyl acetate (3 x 10 mL) and the combined filtrate is concentrated by rotary evaporation (40 °C, 20 mmHg) to afford ca. 11.7 g of a pale yellow oil. This material is diluted with ethyl acetate (2.5 mL) and deposited onto a column (90 mm diameter) of 410 g of silica gel (12 cm high) (Note 10) prepared as a slurry in 10:1 ethyl acetate-MeOH. Elution is carried out with 10:1 ethyl acetate-MeOH collecting 50-mL fractions. The desired product is obtained in fractions 18-34 (Note 11). Mixed fractions 11-17 are collected separately and concentrated by rotary evaporation (40 °C, 20 mmHg) (Note 12). The resulting colorless oil is diluted with ethyl acetate (1.5 mL) and loaded onto a column (60 mm diameter) of 200 g of silica gel (5.5 cm high) (Note 10) prepared as a slurry in 10:1 ethyl acetate-MeOH. Elution is carried out with 10:1 ethyl acetate-MeOH collecting 50-mL fractions. The desired product is obtained in fractions 11-23. All fractions containing pure product according to TLC (Note 11) are combined and concentrated by rotary evaporation (40 °C, 20 mmHg). Further concentration at 25 °C under 0.1 mmHg for 2 h provides 7.5 g (78%) of amino stannane 1 as a colorless oil (Notes 9, 13, 14 and 15).
B. (±)-cis-3-(2-Chloro-4-fluorophenyl)-5-methylmorpholine (2). An oven-dried 250-mL pear-shaped recovery flask equipped with a 40 x 20 mm, Teflon-coated, oval magnetic stir bar is charged with 4 Å molecular sieves (1.72 g) (Note 16) and acetonitrile (75 mL) (Note 17) via a syringe. The flask is fitted with a rubber septum and nitrogen inlet needle, after which the stir rate is set to ca. 375 rpm. 1-((Tributylstannyl)methoxy)propan-2-amine (1) (6.5 g, 17.2 mmol, 1.0 equiv) (Notes 13 and 14) prepared in step A is added in one portion via a syringe followed by 2-chloro-4-fluorobenzaldehyde (2.73 g, 17.2 mmol, 1.0 equiv) (Note 18) that is weighed in air and is added in one portion to the reaction flask. The pale-yellow suspension is stirred at 25 °C for 4 h (Note 19). The resulting yellow suspension is filtered over 2.5 g of Celite in a 30-mL sintered glass funnel (30 mm diameter, medium porosity) into a 250-mL pear-shaped recovery flask. The solid material is rinsed with acetonitrile (3 x 5 mL), and the filtrate is then concentrated by rotary evaporation (40 °C, 20 mmHg) to afford ca. 8.9 g of the imine as a clear yellow oil (Notes 20 and 21).
Separately, an oven-dried 1-L pear-shaped recovery flask equipped with a 40 x 20 mm, Teflon-coated, oval magnetic stir bar, a rubber septum and a nitrogen inlet needle is charged with
Cu(OTf)2 (6.2 g, 17.2 mmol, 1.0 equiv) (Note
22 and
23).
Dichloromethane (250 mL) (
Note 24) and
1,1,1,3,3,3-hexafluoro-2-propanol (65 mL) (
Note 25) are added via a syringe. Stirring with a rate of ca. 400 rpm is started and
2,6-lutidine (1.99 mL, 1.84 g, 17.2 mmol, 1.0 equiv) (Note
26 and
27) is added over 5 min via a syringe to the grey suspension affording a green suspension containing scattered lumps of
Cu(OTf)2 (Figure 2a). This suspension is stirred at 25 °C for 1 h affording a more homogeneous dark green suspension (Figure 2b) (
Note 28).
Figure 2. Color change through the course of the copper complex formation
A solution of the imine prepared earlier (ca. 8.9 g) (Notes 20 and 21) in dichloromethane (10 mL) (Note 24) is added dropwise via syringe over 5 min affording a brown reaction mixture. The flask that contained the imine is rinsed with dichloromethane (2 x 2.5 mL) (Note 24) that are added to the reaction mixture via syringe in one portion.
The resulting brown reaction mixture is stirred at 25 °C for 12 h affording a green suspension that is quenched with a pre-mixed solution of 1:1 water-
NH4OH solution (150 mL) (
Note 29), which is added via a graduated cylinder in one portion (Notes
30 and
31). The biphasic mixture is stirred vigorously (ca. 800 rpm) for 30 min before being poured into a 1-L separatory funnel. The blue aqueous layer is separated and extracted with
dichloromethane (2 x 25 mL). The combined organic layers are washed with a pre-mixed solution of 1:1 water-
NH4OH solution (2 x 40 mL) (
Note 29) and saturated
NaCl solution (2 x 40 mL), dried over anhydrous
MgSO4 (15 g), and filtered through a 150-mL sintered glass Büchner funnel (medium porosity, 66 mm diameter). The
MgSO4 is washed with
dichloromethane (3 x 15 mL) and the combined filtrate is concentrated by rotary evaporation (40 °C, 20 mmHg). The resulting brown oil is further concentrated at 40 °C and ca. 0.1 mmHg to remove most of the
2,6-lutidine (prior to chromatographic purification) affording ca. 13.0 g of brown oil (
Note 32). This material is diluted with
dichloromethane (5 mL) and deposited onto a column (90 mm diameter) of 340 g of silica gel (10 cm high) (
Note 10) prepared as a slurry in 12:1
dichloromethane-
ethyl acetate. Elution is carried out with 12:1
dichloromethane-
ethyl acetate (2 L) and then 9:1
dichloromethane-
ethyl acetate, collecting 50-mL fractions. The desired product is obtained in fractions 28-65 (
Note 33). These fractions are combined, and the solvent is removed by rotary evaporation (40 °C, 20 mmHg). Further concentration at 25 °C under 0.1 mmHg for 2 h provides 2.55 g (65%) of morpholine
2 as a yellow oil (Figure 3) (Notes
9,
15,
34 and
35).
Figure 3. Product of Step B
2. Notes
1. Prior to performing each reaction, a thorough hazard analysis and risk assessment should be carried out with regard to each chemical substance and experimental operation on the scale planned and in the context of the laboratory where the procedures will be carried out. Guidelines for carrying out risk assessments and for analyzing the hazards associated with chemicals can be found in references such as Chapter 4 of "Prudent Practices in the Laboratory" (The National Academies Press, Washington, D.C., 2011; the full text can be accessed free of charge at
https://www.nap.edu/catalog/12654/prudent-practices-in-the-laboratory-handling-and-management-of-chemical. See also "Identifying and Evaluating Hazards in Research Laboratories" (American Chemical Society, 2015) which is available via the associated website "Hazard Assessment in Research Laboratories" at
https://www.acs.org/content/acs/en/about/governance/committees/chemicalsafety/hazard-assessment.html. In the case of this procedure, the risk assessment should include (but not necessarily be limited to) an evaluation of the potential hazards associated with
sodium hydride,
pentane, mineral oil,
tetrahydrofuran,
N,N-dimethylformamide,
DL-alaninol,
tributyl(iodomethyl)stannane,
ammonium chloride,
ethyl acetate,
sodium chloride,
magnesium sulfate (anhydrous),
methanol, silica gel, molecular sieves,
acetonitrile,
2-chloro-4-fluorobenzaldehyde, Celite,
copper(II) triflate,
dichloromethane,
1,1,1,3,3,3-hexafluoro-2-propanol,
2,6-lutidine, and
ammonium hydroxide.
2.
Sodium hydride (60% dispersion in mineral oil) was purchased from Sigma-Aldrich and used as received.
3.
Pentane (anhydrous, ≥99%) was purchased from Sigma-Aldrich and used as received.
4.
Tetrahydrofuran (low water inhibitor free HPLC grade) was purchased from Sigma-Aldrich and purified by pressure filtration through activated alumina immediately prior to use.
5.
N,N-Dimethylformamide (low water inhibitor free HPLC grade) was purchased from Sigma-Aldrich and purified by pressure filtration through activated alumina immediately prior to use.
6.
DL-Alaninol (98%) was obtained from Sigma-Aldrich and used as received.
7.
Tributyl(iodomethyl)stannane was prepared according to a modified procedure of Seitz et al
2 published in
Organic Syntheses from Bode, et al,
Org. Synth.
2018,
95, 345.
8. TLC analysis indicated that full conversion had occurred, as
DL-alaninol was not visible at this point (10:1,
ethyl acetate-
MeOH with KMnO
4 stain visualization):
DL-alaninol (R
f = 0.08) and
1-((tributylstannyl)methoxy)propan-2-amine (
1) (R
f = 0.18).
9. The KMnO
4 stain was prepared using 1.5 g of KMnO
4 and 10 g of K
2CO
3 dissolved in 200 mL of water and 1.25 mL of 10% m/v NaOH solution.
10. High-purity Silica gel grade (9385), pore size 60 Å, 230-400 mesh particle size purchased from Sigma-Aldrich.
11. Purification is followed using TLC analysis on Silica gel (10:1,
ethyl acetate-
MeOH with KMnO
4 stain visualization):
1-((tributylstannyl)methoxy)propan-2-amine (
1) (R
f = 0.18).
12. The impurities in those mixed fractions do not affect the subsequent imine formation and annulation reaction. Mixed fractions that contain mostly product can be combined with the pure material in order to avoid a second column purification and save solvent.
13. A second reaction performed on half-scale provided 3.65 g (78%) of the same colorless oil.
1-((Tributylstannyl)methoxy)propan-2-amine (
1) decomposes over time when stored neat at ambient temperature. This reagent should be stored as a degassed 1 M solution in dry
dichloromethane at -10 °C in which it is stable for months.
14.
1-((Tributylstannyl)methoxy)propan-2-amine (
1) has the following physical and spectroscopic properties: R
f = 0.18 (10:1
ethyl acetate-
MeOH; KMnO
4 visualization; Merck Millipore TLC Silica gel 60 F254 plates);
1H NMR
pdf(CDCl
3, 400 MHz) δ: 0.88-0.93 (m, 15H), 1.03 (d,
J = 6.3 Hz, 3H), 1.26-1.35 (m, 6H), 1.41-1.62 (m, 6H), 1.76 (bs, 2H), 3.01-3.14 (m, 2H), 3.25 (td,
J = 3.1, 1.5 Hz, 1H), 3.70 (d,
J = 10.3 Hz, 1H), 3.76 (d,
J = 10.3 Hz, 1H);
13C
pdf(CDCl
3, 101 MHz) δ: 9.0, 13.7, 19.6, 27.3, 29.1, 46.5, 62.3, 82.4; HRMS (ESI) calculated for C
16H
38NOSn [M + H]
+ 380.19699, found 380.19654; IR (film): 2955, 2924, 2871, 2853, 1463, 1376, 1086, 864, 726, 688, 664, 594, 504 cm
-1. Purity was assessed as 95% by Q NMR
pdf using 4'-nitroacetophenone as the internal standard.
15.
1H NMR chemical shifts are expressed in parts per million (d) downfield from tetramethylsilane (with the CHCl
3 peak at 7.26 ppm used as a standard).
13C NMR chemical shifts are expressed in parts per million (δ) downfield from tetramethylsilane (with the central peak of CHCl
3 at 77.00 ppm used as a standard) and
117/
119Sn-
13C couplings are not reported.
16. 4 Å Molecular sieves (powder, activated, 325 mesh particle size) was purchased from Sigma-Aldrich. The sieves are activated at 120 °C and 0.1 mmHg for 12 h.
17.
Acetonitrile (≥99.5% HPLC gradient grade) was purchased from Fisher Scientific and purified by pressure filtration through activated alumina immediately prior to use.
18.
2-Chloro-4-fluorobenzaldehyde (98.0%) was purchased from Fluorochem and used as received.
19. A small aliquot was taken and filtered to remove the molecular sieves. Concentration using a rotavap (40 °C, 20 mmHg) afforded an orange oil which upon
1H NMR measurement indicated full conversion.
20. The imine is stable neat at ambient temperature. No special precautions need to be taken.
21. The intermediate imine has the spectroscopic properties:
1H NMR
pdf(CDCl
3, 400 MHz) δ: 0.84 (t,
J = 7.3 Hz, 15H), 1.17-1.29 (m, 9H), 1.37-1.54 (m, 6H), 3.38 (d,
J = 3.1 Hz, 1H), 3.40 (d,
J = 0.7 Hz, 1H), 3.53-3.65 (m, 1H), 3.67 (d,
J = 10.3 Hz, 1H), 3.75 (d,
J = 10.3 Hz, 1H), 6.99 (dddd,
J = 8.7, 7.9, 2.5, 0.7 Hz, 1H), 7.10 (dd,
J = 8.5, 2.5 Hz, 1H), 8.06 (dd,
J = 8.8, 6.4 Hz, 1H), 8.61 (s, 1H);
13C
pdf(CDCl
3, 101 MHz) δ: 8.9, 13.7, 18.7, 27.2, 29.1, 62.3, 65.7, 79.8, 114.5 (d,
JCF = 21.4 Hz), 116.8 (d,
JCF = 24.8 Hz), 129.9 (d,
JCF = 3.5 Hz), 130.1 (d,
JCF = 9.1 Hz), 135.8 (d,
JCF = 10.6 Hz), 155.8, 163.6 (d,
JCF = 253.5 Hz).
22.
Cu(OTf)2 (98%) was purchased from Strem Chemical and dried at 115 °C at 0.1 mmHg for 2 h before use. The dried
Cu(OTf)2 can be stored in a desiccator and be used for weeks without a negative impact on the reaction outcome.
23.
Cu(OTf)2 from other suppliers gave inferior results. A 1:1
Cu(OTf)2 -
2,6-lutidine complex in HFIP (0.1 M) of a suitable copper source affords a green suspension within 0.5-1 h (see picture below - left side) while inferior
Cu(OTf)2 sources afford blue or purple suspensions (see picture below - right side).
24.
Dichloromethane (HPLC grade) was purchased from Fisher Scientific and purified by pressure filtration through activated alumina immediately prior to use.
25.
1,1,1,3,3,3-Hexafluoro-2-propanol, also known as 1,1,1,3,3,3-hexafluoroisopropanol or
HFIP (99.9%) was purchased from Fluorochem and was used as received.
26.
2,6-Lutidine (ReagentPlus, 98%) was purchased from Sigma-Aldrich and used as received.
27. This is a slightly endothermic reaction.
28. Different colors at this point in time, other than various shades of green, often result in lower yields. This phenomenon was observed using
Cu(OTf)2 from suppliers other than Strem Chemicals (
Note 23).
29.
Ammonium hydroxide solution (ACS reagent, 28.0-30.0% NH
3 basis) was purchased from Sigma-Aldrich and used as received.
30. This is a slightly exothermic reaction.
31. The reaction progress was not monitored.
32. TLC analysis (9:1,
dichloromethane-
ethyl acetate with KMnO
4 stain visualization): Side product (R
f = 0.38), (±)-
cis-3-(2-chloro-4-fluorophenyl)-5-methylmorpholine
(
2) (R
f = 0.31), and
2,6-lutidine (R
f = 0.18). The morpholine
2 is barely visible using UV 254 nm as the visualization technique. In general, product heterocycles are detected by TLC in the unpurified reaction mixture using both, potassium permanganate and ninhydrin stains. The product is visible with both developing agents while
2,6-lutidine is only visible using UV 254 nm and does not stain using KMnO
4 or ninhydrin (see pictures below in which 4:1 hexanes-
ethyl acetate was used as the eluent for better separation on the TLC plate).
33. Purification is followed using TLC analysis on silica gel (9:1
dichloromethane-
ethyl acetate; KMnO
4 visualization; Merck Millipore TLC Silica gel 60 F254 plates): (±)-
cis-3-(2-Chloro-4-fluorophenyl)-5-methylmorpholine (
2) (R
f = 0.31). The morpholine
2 is barely visible using UV 254 nm as the visualization technique.
34. (±)-
cis-3-(2-Chloro-4-fluorophenyl)-5-methylmorpholine (
2) has the following physical and spectroscopic properties: R
f = 0.31 (9:1,
dichloromethane-
ethyl acetate; KMnO
4 visualization; Merck Millipore TLC Silica gel 60 F254 plates) and R
f = 0.45 (4:1 hexanes-
ethyl acetate; KMnO
4 visualization; Merck Millipore TLC Silica gel 60 F254 plates);
1H NMR
pdf(CDCl
3, 400 MHz) δ: 1.03 (d,
J = 5.9 Hz, 3H), 1.72 (bs, 1H), 3.09-3.18 (m, 3H), 3.78 (d,
J = 8.2 Hz, 1H), 3.90 (ddd,
J = 10.8, 3.1, 0.7 Hz, 1H), 4.42 (ddd,
J = 9.9, 5.0, 0.3 Hz, 1H), 6.98 (dddd,
J = 8.6, 7.9, 2.6, 0.4 Hz, 1H), 7.09 (dd,
J = 8.5, 2.6 Hz, 1H), 7.67 (dd,
J = 8.7, 6.3 Hz, 1H);
13C
pdf(CDCl
3, 101 MHz) δ: 17.8, 50.9, 56.0, 71.2 (d,
JCF = 1.3 Hz), 73.06, 114.2 (d,
JCF = 20.6 Hz), 116.6 (d,
JCF = 24.6 Hz), 129.5 (d,
JCF = 8.7 Hz), 133.6 (d,
JCF = 10.1 Hz), 133.7 (d,
JCF = 3.4 Hz), 161.5 (d,
JCF = 249.4 Hz); HRMS (ESI) calculated for C
11H
14ClFNO [M + H]
+ 230.07425, found 230.07385; IR (film): 3015, 2970, 2960, 2949, 1740, 1488, 1436, 1366, 1229, 1216, 1102, 910, 588, 539, 527, 515 cm
-1. Purity was assessed as 97% by Q NMR
pdf using 4'-nitroacetophenone as the internal standard.
35. A second reaction performed on half-scale provided 1.31 g (66%) of the same yellow oil. In general, the reaction is not very sensitive to oxygen or H
2O and can be conducted without extra dry solvents or without pre-dried
Cu(OTf)2 with only slightly diminished yields.
3. Discussion
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