1. Prior to performing each reaction, a thorough hazard analysis and risk assessment should be carried out with regard to each chemical substance and experimental operation on the scale planned and in the context of the laboratory where the procedures will be carried out. Guidelines for carrying out risk assessments and for analyzing the hazards associated with chemicals can be found in references such as Chapter 4 of "Prudent Practices in the Laboratory" (The National Academies Press, Washington, D.C., 2011; the full text can be accessed free of charge at https://www.nap.edu/catalog/12654/prudent-practices-in-the-laboratory-handling-and-management-of-chemical. See also "Identifying and Evaluating Hazards in Research Laboratories" (American Chemical Society, 2015) which is available via the associated website "Hazard Assessment in Research Laboratories" at https://www.acs.org/content/acs/en/about/governance/committees/chemicalsafety/hazard-assessment.html. In the case of this procedure, the risk assessment should include (but not necessarily be limited to) an evaluation of the potential hazards associated with 2,5-Dimethoxytetrahydrofuran, deionized H2O, toluene, succinaldehyde, dry ice, acetone, ethyl acetate, 1,3,5-trimethoxybenzene, l-Proline, Thiomorpholine, thiomorpholine trifluoroacetate, silica gel, sodium sulfate, magnesium acetate, dichloromethane, n-pentane, methanol, chloroform-d, potassium carbonate, acenaphthene, diethyl ether, and Trifluoroacetic acid.
2. 2,5-Dimethoxytetrahydrofuran (mixture of cis- and trans-isomers, 99%) was purchased from Acros Organics and used as received.
3. All exposed hot surfaces were insulated with cotton wool and aluminum foil to ensure constant distillation.
4. A distillate (mixture of H2O and MeOH) of 110 mL was collected during this period.
5. Attempts to remove the remaining solvent by distillation required lower pressures and higher temperatures, which facilitated polymerization and more polymer content in succinaldehyde. Therefore, rotary evaporation was used for further removal of solvent, which did not interfere with the yield and purity.
6. The reaction mixture was allowed to cool to 65 °C over the course of 45 minutes. The distillation apparatus was disassembled, and the flask was connected to a rotary evaporator with the water bath set to 65 °C. The pressure was reduced in a slow and controlled manner to ensure the reaction mixture did not bump.
7. Caution: succinaldehyde has a particularly distinct and unpleasant odor. At this stage, crude succinaldehyde can be diluted with dichloromethane (ca. 4 mL/g) and stored in a freezer (-20 °C) prior to distillation the following day. The crude succinaldehyde can be stored in dichloromethane at -20 °C for up to a month, but it must be distilled, and purity assessed by NMR prior to use in the next reaction. Distillation temperature and vacuum must be carefully maintained to prevent any polymerization
8. Crude succinaldehyde was transferred to the 100 mL round-bottomed flask using dichloromethane to facilitate transfer. The dichloromethane was then carefully removed under reduced pressure (22 mmHg, 25 °C) and the crude product was stirred under high vacuum (0.1 mmHg) for 30 min to ensure thorough removal of dichloromethane and residual toluene prior to distillation. Care should be taken during distillation to avoid bumping of the crude product over to the receiving flask. If this is a problem, it can be mitigated by gradual heating or use of a larger distilling flask (e.g. a 250 mL round-bottomed flask).
9. The dry ice/acetone bath is necessary to prevent potential polymerization of neat succinaldehyde during the distillation process.
10. All exposed hot surfaces were insulated with cotton wool and aluminum foil to ensure constant distillation. Towards the end of the distillation process, the oil bath can be increased to 90 °C to assist with the complete distillation of succinaldehyde.
11. Following completion of distillation, the dry ice/acetone bath was removed and the receiving flask containing the colorless solid succinaldehyde was allowed to warm under high vacuum to provide succinaldehyde as a colorless oil. This slow-warming process also prevents the rapid polymerization of neat succinaldehyde.
12. Succinaldehyde can be stored as a solution in dichloromethane (ca. 4 mL/g) and kept in a freezer (−20 °C) for 4 weeks. However, to ensure reliable and reproducible results, succinaldehyde must always be freshly distilled prior to use and its quality checked by 1H NMR analysis. The quality of distilled succinaldehyde can be determined by 1H NMR analysis using 13C-1H satellites in a manner similar to that described by Davies and co-workers.3 13C-1H satellites are 1.108% abundant and provide a ratio of 1:178.5 vs. the parent 12C-1H resonance. Integration of one of the 13C-1H satellites of succinaldehyde's aldehydic hydrogen resonance (d = 9.82 ppm, chloroform-d) to provide a value of 1.00 allows for comparison against the integration of the oligomeric hemi-acetal region (d ≈ 5.80 - 5.30 ppm, chloroform-d). Where the integration of oligomeric material is ≤15.00, the subsequent l-Proline-catalyzed dimerization will provide yields between 25-29% as described. Freshly distilled succinaldehyde always shows the oligomeric proton integration ≤6.00. But storage period of >45 min causes the integration to increase >15.00. For this and subsequent analysis, the chloroform-d used was treated with K2CO3 to remove any DCl, which can promote succinaldehyde oligomerization as well as decomposition of bicyclic enal 2, which is prepared in the next step.
13. Succinaldehyde has the following physical and spectroscopic properties: Rf = 0.34 (50% EtOAc in n-pentane); 1H NMR pdf (400 MHz, chloroform-d) d: 9.80 (s, 2H), 2.79 (s, 4H); 13C NMR pdf (101 MHz, chloroform-d) d: 199.8, 36.2; IR (neat) νmax: 2910, 2839, 2734, 1711, 1387, 1355, 1261, 1195, 1052, 979, 925, 870 and 764 cm−1. Quantitative 1H NMR pdf analysis using 14.0 mg of succinaldehyde and 26.0 mg of acenaphthene (99%, Sigma Aldrich) as an internal standard provided a purity assessment of 93.3% by weight. Two other reactions performed by the checkers on full scale provided 48.8 g (73%) and 55.9 g (84%) of succinaldehyde.
14. Succinaldehyde (25.0 g, 0.290 mol, 1.00 equiv) was transferred to the 2 L round-bottomed flask using a glass Pasteur pipette as previous transfers using a syringe and needle had resulted in the rapid polymerization of neat succinaldehyde. The quality of succinaldehyde must be checked by 1H NMR analysis prior to setting up the l-Proline catalyzed dimerization as the presence of oligomers will result in the observable formation of numerous purple oligomers that stick to the walls of the round-bottomed flask and result in a poor yield of bicyclic enal 2.
15. It is essential to ensure full dissolution of succinaldehyde in ethyl acetate prior to the addition of l-Proline (free-flowing solid) (ReagentPlus®, ≥99%; purchased from Sigma-Aldrich). This can be confirmed by briefly stirring the solution (800 rpm, 30 seconds to 2 min) and observing the dissolution of succinaldehyde to form a homogenous solution. If this is not performed, rapid formation of pink/purple oligomers is observed.
16. Room temperature was typically (20-24 °C).
17. An aliquot (0.1 mL) of the reaction mixture was taken and concentrated under high vacuum (0.01 mmHg) to remove ethyl acetate. chloroform-d was added (0.5 mL) and the solution transferred to an NMR tube. 1H NMR analysis using a Bruker 400 MHz NMR spectrometer (16 scans, 30° pulse angle, 30 s relaxation delay, 25 °C) followed by integration of the aromatic signal of 1,3,5-trimethoxybenzene (d = 6.08, s, 3H), then the aldehyde of succinaldehyde (d = 9.82, s, 2H) quantified the amount of succinaldehyde remaining by the following method: The integration of the succinaldehyde peak was divided by 80 to account for both the 2.50 mol% of internal standard used and the two aldehyde protons of succinaldehyde. The value obtained was then multiplied by 100 to convert into a percentage. At this point in the reaction, 10% of succinaldehyde remained.
18. Thiomorpholinium trifluoroacetate was prepared according to a procedure outlined by List and co-workers:4 To a rapidly stirring solution of freshly distilled Thiomorpholine (1.00 mL, 10.0 mmol, 1.00 equiv) in anhydrous diethyl ether (20 mL) was added a solution of Trifluoroacetic acid (0.84 mL, 11 mmol, 1.10 equiv) in anhydrous diethyl ether (10 mL) at 0 °C slowly dropwise (syringe pump: 1 mL/min). The reaction was allowed to stir at 0 °C for 1 h before warming to room temperature and stirring overnight. The white precipitate obtained was filtered and washed thoroughly with diethyl ether before leaving to dry under high vacuum (0.1 mmHg) overnight to afford thiomorpholinium trifluoroacetate (2.12 g, 98%) as a white solid.
19. The reaction temperature reaches ~65 °C after 30 min of being immersed in the oil bath and is stirred for 2 h from this point.
20. The reaction mixture color turns from a luminous red (5 min) to a deep purple (15 min), and finally, to a brown heterogeneous mixture (30 min).
21. An aliquot of the reaction mixture (0.1 mL) was taken at this point to quantify the amount of succinaldehyde remaining using the method described in Note 12 (5% of succinaldehyde remained). The NMR yield of bicyclic enal 2 was also obtained using the same method: following integration of the aromatic signal of 1,3,5-trimethoxybenzene (δ = 6.08, s, 3H), the diastereomeric alkene protons of bicyclic enal 2 (δ = 6.78, app. q, 1H; δ = 6.65, app. q, 1H; 1.9:1 d.r.) were integrated and the values obtained added together. This number was divided by 20 to account for the 2.50 mol% of internal standard used and the 0.5 equivalents of bicyclic enal 2 formed (dimerization). The value obtained was then multiplied by 100 to convert into a percentage. At this point in the reaction, a 30% NMR yield of bicyclic enal 2 was obtained.
22. Pre-treated wet silica gel was prepared by adding H2O (25 mL) to silica gel (50 g; Sigma-Aldrich technical grade, 40-63 µm) (33% w/w) inside a sealable container. The container lid was closed, and the mixture was shaken vigorously until a uniform consistency was obtained (this process is exothermic, and care should be taken when venting the container). The wet silica gel was then allowed to stand for 1 h prior to use.
23. The pre-treated wet silica gel helps by binding the polymers produced during the dimerization process as well as assisting with the decomposition of succinaldehyde.
24. An aliquot (0.1 mL) of the mother liquor can be taken at this point and analyzed according to Notes 17 and 21 to quantify the level of succinaldehyde remaining and the NMR yield of bicyclic enal 2 to ensure thorough removal of the desired product from the wet silica gel.
25. The 12% w/w aqueous Na2SO4 solution was prepared by slowly adding Na2SO4 (120 g) portion wise to vigorously stirred H2O (880 mL). Gentle heating was used to assist with the dissolution of Na2SO4. Previously, 17% w/w aqueous Na2SO4 solutions were used for this "salting-out" extraction process.5,6 However, this increased saturation often led to Na2SO4 crashing out of the aqueous phase during extraction.
26. An aliquot (the tip of a glass Pasteur pipette) of the crude product can be taken at this point and analyzed according to Notes 17 and 21 to quantify the level of succinaldehyde remaining and the NMR yield of bicyclic enal 2.
27. Residual succinaldehyde co-elutes with the product during flash column chromatography and also causes streaking.
28. Following elution of fraction 30 (~1.5 L of eluent) the gradient can be increased to 75% EtOAc in n-pentane to facilitate quicker removal of product. However, this results in bicyclic enal 2 being obtained in slightly lower purity as a dark brown solid.
29. Bicyclic enal 2 has the following physical and spectroscopic properties: mp 88-90 °C; Rf = 0.20 (50% EtOAc in n-pentane); 1H NMR pdf (400 MHz, chloroform-d) d: 9.77 (s, 0.3 × 1H),* 9.76 (s, 0.7 × 1H), 6.78 (app. q, J = 2.1 Hz, 0.3 × 1H),* 6.65 (app. q, J = 2.1 Hz, 0.7 × 1H), 5.56 (d, J = 5.0 Hz, 0.7 × 1H), 5.52 (dd, J = 4.8, 0.3 × 1H),* 4.96 (broad t, J = 6.1, 0.7 × 1H), 4.89 (dt, J = 6.9, 4.1 Hz, 0.3 × 1H),* 3.66 (dt, J = 11.0, 6.0 Hz, 0.7 × 1H), 3.59-3.52 (broad m, 0.3 × 1H),* 3.08 - 2.66 (m, 3H),* 2.33 - 2.17 (m, 1H),* 2.10 (d, J = 13.3 Hz, 0.3 × 1H),* 1.94 (dt, J = 13.3, 5.1 Hz, 0.7 × 1H) ppm (peaks which contain minor diastereomer have been marked with an asterisk (*)); 13C NMR pdf (101 MHz, chloroform-d): δ 190.2,* 190.1, 153.3,* 152.4, 144.7,* 144.7, 99.0,* 98.6, 82.9,* 80.9, 50.0,* 49.4, 38.2,* 38.0, 35.5 ppm (peaks which contain minor diastereomer have been marked with an asterisk (*)); HRMS (ESI) m/z calculated for C8H10NaO3 [M+Na]+: 177.0522, found: 177.0526; IR, νmax: 3468, 2993, 2928, 2855, 1659, 1617, 1444, 1367, 1261, 1162, 1086, 1036, 995, 979, 870, 797, 764 cm-1. Quantitative 1H NMR pdf analysis using 25.0 mg of bicyclic enal 2 and 25.0 mg of acenaphthene (99%, Sigma Aldrich) as an internal standard provided a purity assessment of 92.0-94.0% by weight. This can be improved to 98.5 wt.% purity following recrystallization from toluene.
30. The enantiomeric ratio of the enal was determined following chiral GC analysis as described by Aggarwal and co-workers.5,7 Chiral GC analysis showed the enantiomeric ratio to be >99:1: Supelco Beta Dex™ 325, Fused silica capillary column (30 m x 0.25 mm x 0.25 µm film thickness); Gas - N2, constant pressure 20 psi, Inlet temperature: 250 ºC, Split ratio 10:1, Detector: FID 250 ºC, Temperature regime: Start 70 ºC (3 min hold), heating to 200 ºC with speed 3 ºC/min (10 min hold). Sample concentration ~ 0.25mg/mL, tR = 36.749 (major), tR = 36.420 (minor). The other isomer was prepared using D-proline as the catalyst following the identical procedure.
31. A second reaction by the checkers on the same scale provided 5.61 g (25%) of the light brown solid.