Visible Light Photocatalysis of Radical Cation Diels-Alder Cycloadditions: Preparation of Tris(2,2'-bipyrazyl) Ruthenium(II) Bis(tetrakis(3,5-bis(trifluoromethyl)phenyl)borate)
1. Procedure
B.
Ru(bpz)3(BArF)2 (2). A 100 mL, three-necked, round-bottomed flask is equipped with magnetic stir bar (17 x 7 mm, egg-shaped, Teflon-coated), glass stopper, thermometer, and charged with
ruthenium(III) chloride (294 mg, 1.42 mmol, 1.0 equiv) (
Note 10).
2,2'-Bipyrazine (
2) (1.00 g, 6.33 mmol, 4.5 equiv) and
ethylene glycol (25.0 mL) (
Note 11) are added to the flask, resulting in a turbid dark-brown mixture. A reflux condenser is attached (Figure 2), and the mixture is heated under nitrogen atmosphere to 214 °C with a silicone oil bath (
Note 12). The stirred solution (500 rpm) is refluxed for 3 h (internal temperature = 195-197 °C), after which time the oil bath is removed and the reaction is allowed to cool to 60 °C (internal temperature) (
Note 13). Upon further cooling over 30 min, the reaction mixture is added drop-wise using glass pipette over 15 min to a 500-mL Erlenmeyer flask containing
acetone (200 mL) (
Note 14), which results in the precipitation of an orange solid. The round-bottomed flask is rinsed with
acetone (2 x 25 mL) and sonicated (15 s) each time, and the combined mixtures are stored at 3 °C for 14 h. The resulting precipitates are collected by vacuum filtration (
Note 15) to afford
tris(2,2'-bipyrazyl)ruthenium(II) chloride as a dark-red powder (
Note 16).
Figure 2. Reaction Apparatus used in Step B (provided by Checker)
The precipitate is transferred to a 250-mL, single-necked, round-bottomed flask equipped with a magnetic stir bar (37 x 17 mm, egg-shaped, Teflon-coated) and water (52.5 mL) (Note 17) is added to afford an opaque dark-red solution. A 24-mL vial is charged with NaBArF (2.48 g, 2.80 mmol, 2.0 equiv) (Note 18) and methanol (17.5 mL) (Note 19), capped (Teflon lining), and inverted until fully mixed. The resulting cloudy white mixture is added to the round-bottomed flask using a glass pipette over 1.5 min, causing a light-brown semisolid precipitate to form. The mixture is stirred for 30 min, and the solid is collected by vacuum filtration (Note 20) to afford a brown powder. The powder is dissolved in acetone (10 mL) and loaded onto a column (4.5 x 18.5 cm) of alumina (250 g) (Note 21) that has been conditioned with dichloromethane. The top of the alumina column is protected with a thin layer of sand (1.5 cm), and the loaded material is eluted by gravity elution with CH2Cl2 (450 mL) (Note 22). The eluent is collected in 17.5 mL fractions, and the dark colored product is obtained in fractions 12-18. Concentration of these fractions by rotary evaporation (35 °C, ca. 200 mmHg) furnishes a dark-brown slurry. The slurry is dissolved in acetone (8 mL) and the chromatography procedure is repeated. The eluent is collected in 17.5 mL fractions, and the dark-brown product is obtained in fractions 12-18. Concentration of these fractions by rotary evaporation (35 °C, ca. 200 mmHg) furnishes a dark-brown slurry (Note 23).
The slurry is dissolved in dichloromethane (75 mL) (Note 24), transferred to a 250-mL Erlenmeyer flask, and layered with benzene (60 mL) (Note 25) by slow pouring from a 50-mL graduated cylinder (2 x 30 mL portions) over 5 min. The solution is cooled to 3 °C for 16 h, and the resulting crystals are collected by vacuum filtration (air aspirator, ca. 300 mmHg) on a 60-mL medium-porosity sintered glass funnel. The crystals are washed with ice-cold benzene (2 x 30 mL) and air-dried for 1 h. Residual dichloromethane (ca. 7-8%) is observed from recrystallization (Note 26). The recrystallized product is dried under vacuum (0.3 mmHg) for 4 h to furnish 1.47 g (0.64 mmol, 45%) of Ru(bpz)3(BArF)2 as orange needles (Notes 27, 28, and 29).
2. Notes
1.
2-Iodopyrazine (97%) was purchased from Sigma-Aldrich and distilled immediately prior to use. The Checker also performed one run using
2-iodopyrazine (97%+) that was purchased from Ark Pharm and distilled immediately prior to use. The starting material is distilled under vacuum through a short-path distillation apparatus at 41-42 °C (1.2 mmHg) and provided a light yellow oil.
2.
N,N-Dimethylformamide (≥ 99.8%) was purchased from Sigma-Aldrich and used as received.
3.
Potassium carbonate (≥ 99.0%) was purchased from Sigma-Aldrich and used as received.
4.
Palladium(II) acetate (99+% [99.95+% Pd]) was purchased from Strem Chemicals Inc. and used as received.
5.
2-Propanol (≥ 99.8%) was purchased from Sigma-Aldrich and used as received.
6. The Submitter and Checker observed that during heating, the heterogeneous mixture turns orange, then dark reddish-purple, and the solid changes from white to brown.
Figure 4. Color changes observed in Step A (provided by Submitter)
The Checker follows progress of the reaction by TLC analysis on silica gel (first placed under 0.3 mmHg vacuum for 5 min) with 50% EtOAc-hexane as eluent. Visualization is performed with UV irradiation, where the 2-iodopyrazine starting material has Rf = 0.52 and the 2,2'-bipyrazine product has Rf = 0.27.
7. An exotherm of
ca. 12 °C was observed upon the addition of saturated aqueous solution of
NH4Cl.
8. The Checker performed recrystallization as follows. The residue is suspended in
EtOAc (25 mL) and transferred open to air into a 100-mL round-bottomed flask. Following removal of
EtOAc in vacuo (35 °C,
ca. 200 mmHg), a magnetic stir bar (14 x 27.5 mm, egg-shaped, Teflon-coated) and
EtOAc (30 mL) are added to the flask. A reflux condenser is attached and the solution is heated to reflux in a silicone oil bath (95 °C). After dissolution of the solid and 15 min at reflux, the flask was removed from the oil bath and the stir bar was removed using a magnetic rod. The flask is allowed to cool under ambient conditions over 1 h, the condenser replaced with a glass stopper, and then placed in a refrigerator at 7 °C for 13 h. The resulting crystals are collected by vacuum filtration (air aspirator,
ca. 300 mmHg) through a Büchner funnel (68 mm diameter; fitted with filter paper) with a 250-mL Erlenmeyer flask with side-arm, washed with hexanes (4 x 5 mL), and air-dried by vacuum (air aspirator,
ca. 300 mmHg) for 30 min. The mother liquor is concentrated by rotary evaporation (35 °C,
ca. 200 mmHg) to furnish a light-brown solid. The residue is transferred to a 100-mL round-bottomed flask with magnetic stir bar (14 x 27.5 mm, egg-shaped, Teflon-coated). Crystallization was carried out as described for the first crop, using 5 mL
EtOAc. The two crops are combined and used in the next step. The Submitter performed recrystallization using a 50-mL Erlenmeyer flask, heated to 75 °C on a hot plate with occasional swirling, and using the same volume of
EtOAc for each recrystallization.
9. Characterization data for
1 obtained by Checker:
1H NMR
pdf(400 MHz, CDCl
3) δ: 8.66 (s, 4H), 9.60 (s, 2H);
13C NMR
pdf(101 MHz, CDCl
3) δ: 143.6, 143.9, 145.3, 149.4; FT-IR (ATR) 3077, 3051, 3015, 1465, 1383, 1092, 1028, 1019, 846 cm
-1; Exact mass EI-MS: calculated
m/z for [C
8H
6N
4]
+: 158.0592, found: 158.0591; Anal. calcd for C
8H
6N
4: C, 60.75; H, 3.82; N, 35.42. Found: C, 60.60; H, 3.94; N, 35.15. Picture provided by Checker.
Figure 5. Product of Step A (provided by Checker)
10.
Ruthenium(III) chloride hydrate (40-43% Ru [99.9%-Ru]) was purchased from Strem Chemicals and used as received.
11.
Ethylene glycol (≥ 99%) was purchased from Sigma-Aldrich and used as received.
12. The oil bath and reaction vessel was wrapped with aluminum foil during the course of the reaction to prevent radiative heat loss.
13. The Submitter reported isolation of 681 mg of crude Ru(bpz)
3Cl
2 (~2.5% by mass of residual
ethylene glycol) following the submitted procedure for precipitation. The Checker observed that precipitation following Submitter's procedure consistently led to low isolated mass (251 mg and 248 mg for 2 separate runs).
The Checker observed that consistent yield of crude Ru(bpz)3Cl2 may be obtained when excess ethylene glycol is removed at this stage by distillation using the procedure as follows. The condenser of the three-necked round-bottomed flask is replaced with a short-path distillation apparatus, and the thermometer is replaced with a glass stopper. The distillation apparatus is fitted with a 100-mL round-bottomed flask (with marking at 20 mL volume). Ethylene glycol is distilled under vacuum by heating in a silicone oil bath to 125 °C. Following removal of 20 mL of ethylene glycol at 70-78 °C (2.9 mmHg), the reaction mixture was cooled again prior to precipitation. Note: the distilled ethylene glycol also contains white precipitates that are identified as 2,2'-bipyrazine by analysis of the corresponding 1H NMR spectrum.
Figure 6. Distillation Apparatus for Removal of Ethylene Glycol (provided by Checker)
14.
Acetone (≥ 99.9%) was purchased from Sigma-Aldrich and used as received.
15. The Checker performed isolation of
tris(2,2'-bipyrazyl)ruthenium(II) chloride as follows. The 500-mL Erlenmeyer flask is first sonicated for 15 s with swirling. The precipitates are collected by vacuum filtration (air aspirator,
ca. 300 mmHg) using a 60-mL medium-porosity sintered glass funnel with a 500-mL Erlenmeyer flask with side-arm. The 500-mL Erlenmeyer flask containing crude material is rinsed with ice-cold
acetone (2 x 15 mL). Any solid deposited on the sides of the flask can be collected by scraping during rinsing. Vacuum is turned off and the collected solid is stirred in ice-cold
acetone (2 x 15 mL), then vacuum is reapplied, resulting in a dark-red paste. The solid is air dried for 30 min, agitating by scraping (once every 10 min) to furnish red-brown powder (670 and 658 mg for 2 separate runs).
Figure 7. Tris(2,2'-bipyrazyl)ruthenium(II) chloride (provided by Checker)
16. Data for crude
tris(2,2'-bipyrazyl)ruthenium(II) chloride:
1H NMR (400 MHz, DMSO-
d6) δ 10.21 (m, 6H), 8.71 (d,
J = 3.0 Hz, 6H), 8.03 (d,
J = 3.0 Hz, 6H);
13C NMR (101 MHz, DMSO-
d6) δ 150.3, 148.5, 147.0, 145.5; FT-IR (ATR) 2999, 2974, 1585, 1407 (s), 1269, 1157 (s), 828, 660 (s), 468 cm
-1; Exact mass ESI-MS: calculated
m/z for [C
24H
18N
12ClRu]
+: 611.0504, found: 611.0500.
17. The Checker used
water (HPLC grade, submicron filtered) that was purchased from Fisher Scientific and used as received.
18.
Sodium tetrakis[bis(3,5-trifluoromethyl)phenyl]borate (97%) was purchased from Alfa Aesar and used as received.
19.
Methanol (absolute) was purchased from Macron Fine Chemicals and used as received.
20. The Checker performed vacuum filtration of the crude solid product as follows. The crude reaction mixture is transferred to a 150-mL medium-porosity sintered glass funnel with a 250-mL Erlenmeyer flask with side-arm. Vacuum (air aspirator,
ca. 300 mmHg) is applied for 16 h until clumps of catalyst are obtained, and the crude solid is agitated then rinsed with
water (10 mL). After drying for 12 h, the crude solid is again agitated, then rinsed with
water (10 mL). Additional drying for 12 h affords 2.49 g of a brown powder (picture provided by Checker).
Figure 8. Ru(bpz)3(BArF)2 as isolated after filtration (provided by Checker)
The Submitter performed vacuum filtration using procedure as follows. The crude reaction mixture is transferred to a 150-mL medium-porosity sintered glass funnel with a 250-mL round-bottomed receiving flask. Vacuum (water aspirator) is applied for 24-48 h (filtration time varies by aspirator pressure), and the crude solid is rinsed with water (2 x 10 mL) then dried to afford a dark brown powder.
21. Alumina (puriss., ≥ 98% Al
2O
3 basis) was purchased from Sigma-Aldrich and used as received.
The Submitter dissolved the powder in
acetone (10 mL) and loaded onto a column (4.5 x 20 cm) of alumina (200 g). The Submitter and Checker performed the column by gravity elution. The Submitter suggests running columns using nitrogen or air positive pressure may reduce the resolution between the product and the brown impurity.
22. The Submitter used
dichloromethane (≥ 99.5%) that was purchased from Sigma-Aldrich and used as received. The Checker used
dichloromethane (≥ 99.5%) that was purchased from Fisher Scientific and used as received.
23. The Checker observed oiling out of product during recrystallization if only two alumina columns were performed. In these cases, the dark-brown slurry is dissolved in
acetone (6 mL) and loaded onto a column (4.5 x 18.5 cm) of alumina (250 g) that had been conditioned with
dichloromethane. The top of the alumina column is protected with a thin layer of sand (1.5 cm), and the loaded material is eluted by gravity filtration with CH
2Cl
2 (450 mL). The eluent is collected in 17.5 mL fractions, and the colored product in fractions 12-18 are collected (2.2-2.3 g) (
Note 24). For improved reproducibility, a minimum total of four alumina columns may be necessary.
Figure 9. Alumina Columns (provided by Checker)
24. The Checker observed that the crude product may begin to precipitate during dilution with
dichloromethane when using a crude product that has been concentrated to complete dryness. This leads to problematic recrystallization, which traps
dichloromethane that is difficult to remove at a later stage. To prevent unwanted precipitation, the Checker recommends concentrating to a viscous oil, and immediately adding
dichloromethane. In cases where precipitation occurs, the Checker adds
acetone (2 mL) (Note 14) to re-dissolve precipitates, then re-attempts concentrating to a viscous oil by rotary evaporation (35 °C,
ca. 200 mmHg).
25.
Benzene (≥ 99.0%) was purchased from Sigma-Aldrich and used as received.
26. The Submitter's
1H NMR spectrum indicates that the Submitter's sample may contain a non-negligible amount of
dichloromethane and a small amount of
benzene. The Checker used 10 mg dimethyl fumarate (Sigma-Aldrich, TraceCERT
®) as internal standard with 48 mg recrystallized product
2 to calculate weight percent of desired product by Q NMR.
27. Q NMR results
pdf for run 1: 1.58 g isolated mass (92.9% pure by Q NMR; 10.2 mg dimethyl fumarate, 47.8 mg analyte), 1.47 g adjusted mass (45% adjusted yield); run 2: 1.70 g isolated mass (92.3% pure by Q NMR; 10.2 mg dimethyl fumarate, 47.7 mg analyte), 1.57 g adjust mass (48% adjusted yield).
28. Characterization data for
2 (anhydrous catalyst, based on EA result and absence of OH absorption in IR spectrum) obtained by Checker: mp = 273-276 °C;
1H NMR
pdf(400 MHz, Acetone-
d6) δ: 7.67 (br s, 8H), 7.78 (m, 16H), 8.47 (dd,
J = 3.1, 0.8 Hz, 6H), 8.79 (d,
J = 3.2 Hz, 6H), 10.21 (br s, 6H);
13C NMR
pdf(101 MHz, Acetone-
d6) δ: 118.5 (app. p,
3JC-F = 3.8 Hz), 125.4 (q,
1JC-F = 272.0 Hz), 130.0 (qq,
2JC-F = 31.4 Hz,
3JC-B = 2.9 Hz), 135.6, 146.6, 148.2, 149.8, 151.9, 162.6 (1:1:1:1 q,
1JC-B = 49.8 Hz);
19F NMR
pdf(376 MHz, Acetone-
d6) δ -62.1; UV (
CH2Cl2); λ
max, nm (ε): 294 (5.71 x 10
4); FT-IR (ATR) 1698, 1409, 1354 (s), 1275 (s), 1117 (br, s), 932, 887, 744, 712, 682 cm
-1; Exact mass ESI-MS: calculated
m/z for [C
24H
18N
12Ru]
2+: 288.0405, found: 288.0409; Exact mass ESI-MS: calculated
m/z for [C
32H
12BF
24]
-: 863.0654, found: 863.0627; Anal. calcd for C
88H
42B
2F
48N
12Ru: C, 45.92; H, 1.84; N, 7.30. Found: C, 45.71; H, 1.53; N, 7.26. Note: elemental analysis obtained using solvent-free sample of
2.
Figure 10. Color of Product Formed in Step B (provided by Checker)
The Submitter reported that the product is isolated as the trihydrate, but can be dried in vacuo over P2O5 for 48 h. For the subsequent procedure, drying the catalyst is not necessary. μ
29. A second run by the Checkers provided 1.57 g (0.68 mmol) of
Ru(bpz)3(BArF)2 as orange needles with mp = 274-277 °C.
30.
trans-Anethole (≥ 99%, FCC, FG) was purchased from Sigma-Aldrich and purified by silica gel flash chromatography and vacuum distillation. The Submitter observed generation of an oxidized impurity (
p-anisaldehyde) upon ambient storage conditions, and performed flash chromatography due to similar boiling points of
trans-anethole and
p-anisaldehyde. Distillation further removes residual solvent following flash chromatography. Purified
trans-anethole can be stored for several days when stored in a refrigerator. Purification is performed as follows: 10 g of
trans-anethole is charged onto a column (4.5 x 12.5 cm) of silica gel (75 g) that had been conditioned with a 50:1 mixture of hexanes:ethyl acetate. The top of the silica column is protected with a thin layer of sand (1.5 cm) and the loaded material is eluted with a 50:1 mixture of hexanes:ethyl acetate (510 mL). The eluent is collected in 17.5 mL fractions and the UV-active fractions (fractions 9-19) are combined into a 500-mL recovery flask and concentrated by rotary evaporation (35 °C,
ca. 200 mmHg). The residue is transferred to a 50 mL round-bottomed flask equipped with a magnetic stir bar (12.5 x 9 mm, Teflon-coated) and distilled immediately prior to use. The starting material is distilled at 59-61 °C under vacuum (0.7 mmHg) through a short-path distillation apparatus to provide a colorless oil.
31. The Checker used
isoprene (≥ 99%) that was purchased from Sigma-Aldrich and distilled under a prior to use.
Isoprene (30 g) is distilled through a short-path distillation apparatus at 34-35 °C (760 mmHg) to provide a colorless liquid. The Submitter distilled
isoprene under nitrogen prior to use.
32. Both the Submitter and Checker used 26 W compact fluorescent light bulb with the following specifications: GE Reveal
® (product code 67454, model number FLE26HT3) 1570-lumen T3 spiral CFL bulb.
33. The Checker observed that during the first 10 min of reaction, the mixture turns from yellow to dark orange.
Figure 11. Color Change Observed in Step C (provided by Checker)
The Checker also observed an increase in internal temperature to 27.5-28.5 °C during the course of the reaction.
34. The Checkers performed gas chromatography using a Shimadzu GCMS-QP2010 SE Gas Chromatograph. Column: Shimadzu SHRXI-5MS (cat no. 220-94764-02), -60 to 330/350 °C; 30 m length x 0.25 mm ID x 0.25 μm thickness; 5% diphenyl 95% dimethyl polysiloxane. Injector: 200 °C; detector: 200 °C. Oven program: 80 °C for 1 min, then 20 °C/min to 250 °C for 8.5 min, then 250 °C for 2.5 min. Retention times:
trans-anethole (5.8 min),
1-(4,6-Dimethyl-3-cyclohexen-1-yl)-4-methoxybenzene (8.5 min). The Submitters performed gas chromatography using a Shimadzu GC-2010 Gas Chromatograph. Column: Restek RTX-5: 350 °C; 15 m x 250 μm x 0.25 μm; 5% diphenyl 95% dimethyl polysiloxane. Injector: 300 °C; detector FID: 300 °C. Oven program: 50 °C for 0 min then 15 °C/min to 130 °C for 0 min then 30 °C/min to 250 °C for 5.0 min. Retention times: anethole (5.0 min),
1-(4,6-Dimethyl-3-cyclohexen-1-yl)-4-methoxybenzene (7.4 min), anethole homodimer (9.5 min). Reaction is complete when anethole is consumed and ratio of product to anethole homodimer is ≥ 100:1.
35. Silica (60 Å, 230-400 mesh, 40-63 μm particle size) was purchased from Sigma-Aldrich and used as received.
36. Pentanes (98%) was purchased from Sigma-Aldrich and used as received.
Ethyl acetate (≥ 99.5%) was purchased from Sigma-Aldrich and used as received. The Submitter notes that hexanes can be used as an alternative to pentanes.
37. Characterization data for
3:
1H NMR
pdf(400 MHz, CDCl
3) δ: 0.70 (d,
J = 6.3 Hz, 3H), 1.69 (br s, 3H), 1.74-1.94 (m, 2H), 2.03-2.25 (m, 3H), 2.30 (ddd,
J = 10.5, 10.5, 5.2 Hz, 1H), 3.79 (s, 3H), 5.44 (br s, 1H), 6.84 (d,
J = 8.5 Hz, 2H), 7.08 (d,
J = 8.5 Hz, 2H);
13C NMR
pdf(101 MHz, CDCl
3) δ: 20.4, 23.5, 34.1, 35.4, 40.0, 47.1, 55.3, 113.8, 121.0, 128.6, 133.9, 138.3, 157.9; FT-IR (ATR) 2949, 2888, 2833, 1611, 1511 (s), 1440, 1270 (s), 1242, 1175, 1108, 1038, 823, 801 cm
-1; Exact mass EI-MS: calculated
m/z for [C
15H
20O]
+: 216.1514, found: 216.1518; Anal. calcd for C
15H
20O: C, 83.28; H, 9.32. Found: C, 83.17; H, 9.27.
38. A second run by the Checkers provided 6.78 g (31 mmol, 93%) of the product as a clear, colorless oil.
3. Discussion
The Diels-Alder reaction ranks among the most important reactions for the synthesis of complex organic molecules. One major limitation of classical Diels-Alder methodology, however, arises from electronic considerations; efficient [4+2] cycloadditions generally require the reaction of one electron-rich reaction component (typically the diene) and one electron-deficient component (typically the dienophile). In this regard, radical cation Diels-Alder reactions initiated by single-electron oxidation of an electron-rich dienophile can overcome this fundamental limitation and enable the efficient [4+2] cycloaddition of two electron-rich reaction partners that would otherwise be electronically mismatched.
Appendix
Chemical Abstracts Nomenclature (Registry Number)
2-Iodopyrazine: Pyrazine, 2-iodo-; (40856-15-3)
Potassium carbonate: Carbonic acid, potassium salt (1:2); (584-08-7)
Palladium (II) acetate: Acetic acid, palladium(2+) salt (2:1); (3375-31-3)
Ammonium chloride; (12125-02-9)
2,2'-Bipyrazine; (1) (10199-00-5)
Ruthenium (III) chloride: Ruthenium chloride (RuCl3); (10049-08-8)
Ru(bpz)3Cl2: Ruthenium(2+), tris(2,2'-bipyrazine-κN1,κN1')-, chloride (1:2), (OC-6-11)-; (80925-50-4)
Sodium BArF: Borate(1-), tetrakis[3,5-bis(trifluoromethyl)phenyl]-, sodium (1:1); (79060-88-1)
Ru(bpz)3(BArF)2: Ruthenium(2+), tris(2,2'-bipyrazine-κN1,κN1')-, (OC-6-11)-, tetrakis[3,5-bis(trifluoromethyl)phenyl]borate(1-) (1:2); (2) (1350432-81-3)
trans-Anethole: Benzene, 1-methoxy-4-(1-propen-1-yl)-; (4180-23-8)
Isoprene: 1,3-Butadiene, 2-methyl-; (78-79-5)
1-(4,6-Dimethyl-3-cyclohexen-1-yl)-4-methoxybenzene: Benzene, 1-[(1R,6R)-4,6-dimethyl-3-cyclohexen-1-yl]-4-methoxy-, rel-; (3) (112150-17-1)
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